Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_P15
         (430 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56438| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.0  
SB_9231| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.6  
SB_54293| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.6  

>SB_56438| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 359

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +2

Query: 200 AWAAGEPSGRVDSPRKRD*PTYRHCRPRGGAR 295
           AWAA E   +V SP +R+  T     PRG  +
Sbjct: 326 AWAAAENDTQVQSPTRREDRTSTTAVPRGSRK 357


>SB_9231| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 146

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -3

Query: 296 GGPHRAGGSAGRWVSRVSWASQLGHSAPQRP 204
           GG    G +  RWV+   +A++   + P+RP
Sbjct: 25  GGERPTGSARARWVAEREFATRANLTPPERP 55


>SB_54293| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 116

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +2

Query: 245 KRD*PTYRHCRPRGGAR 295
           +RD   YR+ RPRGGAR
Sbjct: 93  RRDYQAYRYRRPRGGAR 109


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,428,692
Number of Sequences: 59808
Number of extensions: 150466
Number of successful extensions: 552
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 826502419
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)