Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_P15
         (430 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g20490.1 68416.m02595 expressed protein                             28   3.1  
At5g35110.1 68418.m04154 hypothetical protein predicted protein,...    27   4.1  
At3g51540.1 68416.m05644 expressed protein mucin 5AC, Homo sapie...    27   5.4  
At1g30440.1 68414.m03719 phototropic-responsive NPH3 family prot...    27   5.4  

>At3g20490.1 68416.m02595 expressed protein
          Length = 458

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 125 SASRCFSNNNDVGFSRSIQRLEAK*KRK 42
           SA RC+   N VGF +S ++ + K K K
Sbjct: 430 SAYRCYKKENGVGFKKSRKKRQPKKKAK 457


>At5g35110.1 68418.m04154 hypothetical protein predicted protein,
          Arabidopsis thaliana
          Length = 112

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -2

Query: 60 SQIKKKSYHAASGCALYER 4
          S I+++ YH   GCAL+ER
Sbjct: 23 SSIQRRPYHKNCGCALHER 41


>At3g51540.1 68416.m05644 expressed protein mucin 5AC, Homo sapiens,
           PIR:S53363
          Length = 438

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 206 AAGEPSGRVDSPRKRD*PTYRHCRPRG 286
           A G P G V+SP++   P     RP+G
Sbjct: 248 AFGRPVGHVNSPKRNTSPDVTRTRPKG 274


>At1g30440.1 68414.m03719 phototropic-responsive NPH3 family protein
           contains NPH3 family domain, Pfam:PF03000
          Length = 665

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -3

Query: 317 VRGSAFRGGPHRAGGSAGRWVSRV 246
           +R   + GGP+  GG  G W + V
Sbjct: 530 LRSGGYVGGPNEGGGGGGGWATAV 553


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,453,757
Number of Sequences: 28952
Number of extensions: 98507
Number of successful extensions: 263
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 263
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 675111616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)