Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_P12
         (373 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0216 + 15804110-15804284,15804341-15804351                       30   0.67 
06_03_0795 - 24683023-24683155,24685853-24686057,24686275-246864...    30   0.67 
03_05_0517 - 25118232-25118730,25119002-25119273                       28   2.0  
03_02_0269 + 7001891-7002212,7003598-7004037                           28   2.7  
12_02_0219 + 15822050-15824896                                         27   4.7  
09_02_0511 - 10079180-10079355,10079656-10079722,10080144-100801...    27   6.2  
07_03_0202 + 15131001-15131047,15131488-15131754,15131913-151319...    27   6.2  
03_02_0260 - 6924532-6924757,6925443-6925546,6925729-6926007,692...    27   6.2  
01_06_0776 + 31912953-31914086,31914195-31915073,31915160-31915198     27   6.2  
01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008           27   6.2  
12_01_0014 + 105422-105520,105598-105725,105939-106101,106198-10...    26   8.2  
07_01_0601 + 4464745-4465010,4465274-4466582                           26   8.2  
03_02_0259 - 6920472-6920579,6920744-6921022,6921115-6921390,692...    26   8.2  
02_01_0138 + 999809-999821,1000456-1001341,1001424-1003221,10037...    26   8.2  

>12_02_0216 + 15804110-15804284,15804341-15804351
          Length = 61

 Score = 29.9 bits (64), Expect = 0.67
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +3

Query: 99  SGVPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGPAF 221
           SG P+    +H V      FF+  SN  SGNY   + G  F
Sbjct: 12  SGSPAPPYKNHTVAGADGWFFNATSNTTSGNYSDWAAGETF 52


>06_03_0795 -
           24683023-24683155,24685853-24686057,24686275-24686443,
           24686590-24686775,24686916-24687124,24687197-24687362
          Length = 355

 Score = 29.9 bits (64), Expect = 0.67
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 126 HYCRPMEHHYCPPRELCLRQPW 61
           HYCR +E+ YC  + L  R+ W
Sbjct: 181 HYCRSIENWYCLSKTLAEREAW 202


>03_05_0517 - 25118232-25118730,25119002-25119273
          Length = 256

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 12/37 (32%), Positives = 16/37 (43%)
 Frame = +3

Query: 150 DPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPPKRY 260
           D FF++    P GN     T P  VD   P  P + +
Sbjct: 37  DWFFTRKGESPQGNISKEETAPTGVDVTDPGRPGRAF 73


>03_02_0269 + 7001891-7002212,7003598-7004037
          Length = 253

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -2

Query: 285 SHHGREVCRIAWVDNWDD*NRR 220
           + H R+  R+AW D W D +R+
Sbjct: 62  TEHARQRMRVAWADGWVDGSRK 83


>12_02_0219 + 15822050-15824896
          Length = 948

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +1

Query: 1   DNSDTIRQ*KLSC-FSSSPYWPWLPQTEFTWWTIVV 105
           D  D +R+ ++ C F+  P WPWL     ++ T+V+
Sbjct: 269 DFGDPLRKHEMHCRFTQGPPWPWLAVAS-SYGTLVI 303


>09_02_0511 -
           10079180-10079355,10079656-10079722,10080144-10080181,
           10080255-10080336
          Length = 120

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 87  VVDNSGVPSDGNSDHVVIANPDPFFSQPSNG 179
           +++N+G  S GN   ++  N  PFF   SNG
Sbjct: 57  ILNNAGATSKGNYALILPVNEFPFFLVYSNG 87


>07_03_0202 +
           15131001-15131047,15131488-15131754,15131913-15131940,
           15132120-15132179,15132570-15132696,15132907-15133724
          Length = 448

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
 Frame = +3

Query: 75  NRVHVVDNSGVPSDGNSDHVVIANPDPFFSQPSNGP----SGNYEPISTGPAFVDFN 233
           NR+HV+D          + V I+ PDP   +P + P    S    P +   +F +FN
Sbjct: 19  NRLHVLDPPCPSPVAAGEKVSISAPDPISHKPVSRPKVPVSDGNAPNAISKSFFNFN 75


>03_02_0260 -
           6924532-6924757,6925443-6925546,6925729-6926007,
           6926093-6926368,6926460-6926678,6926758-6926926,
           6927208-6927382,6927489-6927600,6929566-6929820
          Length = 604

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +3

Query: 87  VVDNSGVPSDGNSDHVVIANPDPFFSQP 170
           V++N  +P   N  HVV+ANP P    P
Sbjct: 248 VLENCQLPH-ANHGHVVLANPSPILFYP 274


>01_06_0776 + 31912953-31914086,31914195-31915073,31915160-31915198
          Length = 683

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
 Frame = -2

Query: 288 TSHHGREVCRIAWVD----NWDD*NRRTPVQCLWVH 193
           TS+ GRE+ R A  +    + DD  RRTPVQ  + H
Sbjct: 242 TSNSGRELARAAGSNASGSSGDDPGRRTPVQLPYQH 277


>01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008
          Length = 580

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
 Frame = +3

Query: 99  SGVPSD-GNSDHVVIANPDPFF-SQPSNGPSGNYEPIST 209
           SG PS  GN+   + ++P PF  S PS+G SGNY  + T
Sbjct: 464 SGSPSHRGNAG--MKSSPSPFAPSGPSSGGSGNYGRLPT 500


>12_01_0014 +
           105422-105520,105598-105725,105939-106101,106198-106310,
           106787-106825,107026-107109,107193-107241,107331-107422,
           107680-107809,107906-107982,108058-109676,110024-110221,
           110287-110825
          Length = 1109

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 6/39 (15%)
 Frame = +3

Query: 153 PFFSQPSNGPSG------NYEPISTGPAFVDFNHPNYPP 251
           P FS P+  P+G      ++E ++  P F   N PN PP
Sbjct: 875 PGFSAPARVPTGFSSGFSSHEGLNPPPGFSSHNGPNPPP 913


>07_01_0601 + 4464745-4465010,4465274-4466582
          Length = 524

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 123 SDHVVIANPDPFFSQPSNGPSGNYEPISTGPA 218
           SDH V+  P PF   P++  +  + PI T PA
Sbjct: 50  SDHFVLT-PPPFQITPTSIQNSTWLPIPTSPA 80


>03_02_0259 -
           6920472-6920579,6920744-6921022,6921115-6921390,
           6921473-6921691,6921795-6921963,6922248-6922422,
           6922490-6922601,6923343-6923573
          Length = 522

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 87  VVDNSGVPSDGNSDHVVIANPDPFFSQP 170
           V++N  +P   N  HV++ANP P    P
Sbjct: 240 VLENCQLPHP-NHGHVILANPSPILCYP 266


>02_01_0138 +
           999809-999821,1000456-1001341,1001424-1003221,
           1003716-1003805,1004034-1004111,1004513-1004518,
           1004849-1004958,1005174-1005369
          Length = 1058

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -3

Query: 122 IAVRWNTTIVHHVNSV 75
           IA RW T ++HHVNS+
Sbjct: 507 IAGRWLTQMLHHVNSL 522


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,151,212
Number of Sequences: 37544
Number of extensions: 204092
Number of successful extensions: 496
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 495
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 588739508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)