Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_P12
         (373 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8894| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   1.6  
SB_20869| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.6  
SB_44915| Best HMM Match : VWA (HMM E-Value=0)                         27   4.9  
SB_13163| Best HMM Match : VWA (HMM E-Value=2.3e-32)                   27   4.9  
SB_39378| Best HMM Match : VWA (HMM E-Value=0)                         27   4.9  
SB_56087| Best HMM Match : Extensin_2 (HMM E-Value=0.29)               27   6.4  
SB_7134| Best HMM Match : HMG_box (HMM E-Value=2e-16)                  27   6.4  
SB_4940| Best HMM Match : DUF755 (HMM E-Value=2.3)                     27   6.4  
SB_49511| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.4  
SB_20719| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.4  
SB_3457| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.4  
SB_51717| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.5  
SB_48207| Best HMM Match : Peptidase_C5 (HMM E-Value=0.33)             26   8.5  
SB_30667| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.5  
SB_42815| Best HMM Match : rve (HMM E-Value=0.00022)                   26   8.5  
SB_10450| Best HMM Match : Peptidase_C5 (HMM E-Value=1.1)              26   8.5  

>SB_8894| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 162

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +3

Query: 222 VDFNHPNYPPKRYDK 266
           VD NHPNY P+ Y+K
Sbjct: 32  VDLNHPNYLPETYNK 46


>SB_20869| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1212

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 18/41 (43%), Positives = 19/41 (46%)
 Frame = +3

Query: 147  PDPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPPKRYDKP 269
            P P  SQP   P    +PI T PA     HP  PP R  KP
Sbjct: 1077 PPPSTSQPVPPPR-QPDPIPTNPA-----HPTEPPPRQPKP 1111


>SB_44915| Best HMM Match : VWA (HMM E-Value=0)
          Length = 541

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 15/27 (55%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +3

Query: 135 VIANPDPFFSQP-SNGPSGNYEPISTG 212
           VIA PDP  S+P +NG  G   PIS+G
Sbjct: 258 VIAEPDPCLSKPCANG--GTCSPISSG 282


>SB_13163| Best HMM Match : VWA (HMM E-Value=2.3e-32)
          Length = 318

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 15/27 (55%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +3

Query: 135 VIANPDPFFSQP-SNGPSGNYEPISTG 212
           VIA PDP  S+P +NG  G   PIS+G
Sbjct: 54  VIAEPDPCLSKPCANG--GTCSPISSG 78


>SB_39378| Best HMM Match : VWA (HMM E-Value=0)
          Length = 2865

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 15/27 (55%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +3

Query: 135 VIANPDPFFSQP-SNGPSGNYEPISTG 212
           VIA PDP  S+P +NG  G   PIS+G
Sbjct: 409 VIAEPDPCLSKPCANG--GTCSPISSG 433


>SB_56087| Best HMM Match : Extensin_2 (HMM E-Value=0.29)
          Length = 403

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +3

Query: 168 PSNGPSGNYEPISTGPAFVDFNHPNYPPKRYDKPL 272
           P++ PS  Y+P+   P  +       PP  Y KPL
Sbjct: 144 PTSPPSYPYKPLPRIPTSLSLKSLQAPPSYYYKPL 178


>SB_7134| Best HMM Match : HMG_box (HMM E-Value=2e-16)
          Length = 228

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +3

Query: 90  VDNSGVPSDGNSDHVVIANPDPFFSQ 167
           VD+SGV  D  S  +V A  +P FSQ
Sbjct: 161 VDSSGVAGDQRSSLLVSATLNPLFSQ 186


>SB_4940| Best HMM Match : DUF755 (HMM E-Value=2.3)
          Length = 173

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 119 AVRWNTTIVHHVNSVCGSHGQY 54
           A RW T   H+   +CG HG+Y
Sbjct: 55  ATRWTTN--HNCYHICGHHGRY 74


>SB_49511| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 157

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +3

Query: 90  VDNSGVPSDGNSDHVVIANPDPFFSQ 167
           VD+SGV  D  S  +V A  +P FSQ
Sbjct: 90  VDSSGVAGDQRSSLLVSATLNPLFSQ 115


>SB_20719| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 245

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = +3

Query: 105 VPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPPKRY 260
           +P DGN     IAN D     PSN P  ++  +    A V+     +PP  Y
Sbjct: 87  IPEDGNGCAAYIANVD-----PSNKPGSHWLAVYFTYANVNGESFRFPPHAY 133


>SB_3457| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 848

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -2

Query: 129 GHYCRPMEHHYCPPRELCLR 70
           GH C+P     CPP   C+R
Sbjct: 805 GHQCQPDTCDSCPPNSHCMR 824


>SB_51717| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 799

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = +3

Query: 105 VPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGPAFVD-FNHPNYPPKRYDKPL 272
           +P DGN D   I N D     PS+ P  ++  +   P   + ++   +PP  Y + +
Sbjct: 33  IPEDGNGDAAYIVNVD-----PSDKPGSHWLAVYFTPDHCEWWDSFGFPPSAYGRAM 84


>SB_48207| Best HMM Match : Peptidase_C5 (HMM E-Value=0.33)
          Length = 184

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = +3

Query: 105 VPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGPAFVD-FNHPNYPPKRYDKPL 272
           +P DGN D   I N D     PS+ P  ++  +   P   + ++   +PP  Y + +
Sbjct: 33  IPEDGNGDAAYIVNVD-----PSDKPGSHWLAVYFTPDHCEWWDSFGFPPSAYGRAM 84


>SB_30667| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 108

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = +3

Query: 105 VPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGPAFVD-FNHPNYPPKRYDKPL 272
           +P DGN D   I N D     PS+ P  ++  +   P   + ++   +PP  Y + +
Sbjct: 33  IPEDGNGDAAYIVNVD-----PSDKPGSHWLAVYFTPDHCEWWDSFGFPPSAYGRAM 84


>SB_42815| Best HMM Match : rve (HMM E-Value=0.00022)
          Length = 1514

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = +3

Query: 105  VPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGPAFVD-FNHPNYPPKRYDKPL 272
            +P DGN D   I N D     PS+ P  ++  +   P   + ++   +PP  Y + +
Sbjct: 1217 IPEDGNGDAAYIVNVD-----PSDKPGSHWLAVYFTPDHCEWWDSFGFPPSAYGRAM 1268


>SB_10450| Best HMM Match : Peptidase_C5 (HMM E-Value=1.1)
          Length = 245

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = +3

Query: 105 VPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGPAFVD-FNHPNYPPKRYDKPL 272
           +P DGN D   I N D     PS+ P  ++  +   P   + ++   +PP  Y + +
Sbjct: 33  IPEDGNGDAAYIVNVD-----PSDKPGSHWLAVYFTPDHCEWWDSFGFPPSAYGRAM 84


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,496,897
Number of Sequences: 59808
Number of extensions: 235331
Number of successful extensions: 634
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 632
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 607387585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)