Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_P12
(373 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g44340.1 68416.m04764 sec23/sec24 transport family protein co... 31 0.18
At1g20110.1 68414.m02516 zinc finger (FYVE type) family protein ... 29 0.99
At5g59460.1 68418.m07452 scarecrow-like transcription factor 11 ... 28 2.3
At4g26750.1 68417.m03854 hydroxyproline-rich glycoprotein family... 28 2.3
At5g14540.1 68418.m01704 proline-rich family protein contains pr... 27 3.0
At2g23260.1 68415.m02778 UDP-glucoronosyl/UDP-glucosyl transfera... 27 3.0
At1g14700.1 68414.m01757 purple acid phosphatase, putative conta... 27 4.0
At5g45520.1 68418.m05591 hypothetical protein 27 5.3
At4g24150.1 68417.m03465 expressed protein ; expression supporte... 26 7.0
At1g05460.1 68414.m00555 RNA helicase SDE3 (SDE3) identical to R... 26 7.0
At3g54020.1 68416.m05973 phosphatidic acid phosphatase-related /... 26 9.2
At2g15520.1 68415.m01776 zinc finger protein, putative strong si... 26 9.2
At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibit... 26 9.2
>At3g44340.1 68416.m04764 sec23/sec24 transport family protein
contains Pfam domains PF04811: Sec23/Sec24 trunk domain,
PF04815: Sec23/Sec24 helical domain and PF04810:
Sec23/Sec24 zinc finger
Length = 1096
Score = 31.5 bits (68), Expect = 0.18
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +3
Query: 135 VIANPDPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPPKRYDKPLARGG 284
++A P P+ P+ GP P+S+ PA N+P Y +P GG
Sbjct: 245 MMAPPPPYGQPPNAGPFTGNSPLSSPPAHSIPPPTNFPGVPYGRPPMPGG 294
>At1g20110.1 68414.m02516 zinc finger (FYVE type) family protein
contains Pfam profile: PF01363 FYVE zinc finger
Length = 601
Score = 29.1 bits (62), Expect = 0.99
Identities = 18/59 (30%), Positives = 26/59 (44%)
Frame = +3
Query: 108 PSDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPPKRYDKPLARGG 284
P NS+HV + P F+ PS P ++ FN P PP + +PL+ G
Sbjct: 73 PYGQNSEHVPPSAPS--FTSPSQPPPSPPATSLNPNSYSTFNQPPPPPTIHPQPLSSYG 129
>At5g59460.1 68418.m07452 scarecrow-like transcription factor 11
(SCL11) identical to cDNA scarecrow-like 11 (SCL11)
mRNA, partial cds gi:4580526
Length = 172
Score = 27.9 bits (59), Expect = 2.3
Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Frame = +3
Query: 96 NSGVPSDGNSD--HVVIANPDPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPPKRYDKP 269
N G PS +S+ + P+ +PS G+ + + + N PN P+ +DKP
Sbjct: 82 NGGNPSSSSSNGGKKSFSEPESSKVEPSGETDGDLKRKQSEVVSEEQNRPNKSPRSFDKP 141
>At4g26750.1 68417.m03854 hydroxyproline-rich glycoprotein family
protein
Length = 421
Score = 27.9 bits (59), Expect = 2.3
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +3
Query: 168 PSNGPSGNYEPISTGPAFVDFNHP-NYPPKRYDKP 269
PS+ PS ++ P TGP+ + HP ++ P D P
Sbjct: 236 PSSYPSNDHLPPPTGPSDSPYPHPYSHQPYHQDPP 270
Score = 25.8 bits (54), Expect = 9.2
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = +3
Query: 144 NPDPFFSQPSNGPSGNYEPISTGP 215
NP+P++S P + P+ + S+ P
Sbjct: 316 NPEPYYSSPHSAPAPSSTSFSSAP 339
>At5g14540.1 68418.m01704 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 547
Score = 27.5 bits (58), Expect = 3.0
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Frame = +3
Query: 147 PDPFFSQPSNGPSG--NYEPISTGPAFVDFNHPNYPPKRYDKPLAR 278
P P S P N P ++ P + P+ +N P PP YD P R
Sbjct: 357 PYPQQSYPPNPPRQPPSHPPPGSAPSQQYYNAPPTPPSMYDGPGGR 402
>At2g23260.1 68415.m02778 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 456
Score = 27.5 bits (58), Expect = 3.0
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +1
Query: 7 SDTIRQ*KLSCFSSSPYWPWLP 72
S I + + SC SSP+ PW+P
Sbjct: 96 SKIIEEKRYSCIISSPFTPWVP 117
>At1g14700.1 68414.m01757 purple acid phosphatase, putative contains
Pfam profile: PF00149 calcineurin-like phosphoesterase;
similar to purple acid phosphatase (GI:20257479)
[Arabidopsis thaliana]
Length = 366
Score = 27.1 bits (57), Expect = 4.0
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = -3
Query: 113 RWNTTIVHHVNSVCGSHGQYGEEEKH 36
+W I HH G HG E EKH
Sbjct: 239 KWKIVIGHHTIKSAGHHGNTIELEKH 264
>At5g45520.1 68418.m05591 hypothetical protein
Length = 1167
Score = 26.6 bits (56), Expect = 5.3
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -2
Query: 321 SFKIANLYETFTSHHGREVCRIAW 250
SFK+ +L E+ T G E +IAW
Sbjct: 524 SFKVESLMESLTGLQGLESLKIAW 547
>At4g24150.1 68417.m03465 expressed protein ; expression supported
by MPSS
Length = 493
Score = 26.2 bits (55), Expect = 7.0
Identities = 14/49 (28%), Positives = 21/49 (42%)
Frame = +3
Query: 75 NRVHVVDNSGVPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGPAF 221
N+ + +SG+ + S + DPFFS S+G G AF
Sbjct: 102 NQAYTSSHSGMFTPAGSGSAAVTVADPFFSLSSSGEMRRSMNEDAGAAF 150
>At1g05460.1 68414.m00555 RNA helicase SDE3 (SDE3) identical to RNA
helicase SDE3 [Arabidopsis thaliana] GI:13811296
Length = 1002
Score = 26.2 bits (55), Expect = 7.0
Identities = 14/47 (29%), Positives = 17/47 (36%)
Frame = +3
Query: 99 SGVPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGPAFVDFNHP 239
SG SD + F ++G SG Y P GP V P
Sbjct: 4 SGYKSDDEYSVIADKGEIGFIDYQNDGSSGCYNPFDEGPVVVSVPFP 50
>At3g54020.1 68416.m05973 phosphatidic acid phosphatase-related /
PAP2-related
Length = 305
Score = 25.8 bits (54), Expect = 9.2
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = -3
Query: 311 SLIFMRHLLPTTGERFVVSLGWIIGMIE 228
+L+F+R +RF+ LGW+I +++
Sbjct: 185 TLVFVRTYQKYGSKRFIKLLGWVIAILQ 212
>At2g15520.1 68415.m01776 zinc finger protein, putative strong
similarity to zinc finger protein [Arabidopsis thaliana]
GI:976277
Length = 483
Score = 25.8 bits (54), Expect = 9.2
Identities = 16/47 (34%), Positives = 19/47 (40%)
Frame = +3
Query: 138 IANPDPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPPKRYDKPLAR 278
+A PF P+ G +E STG N PPK KP R
Sbjct: 385 LALSQPFTDSPTVYSPGLFETGSTGTFQKKAKQRNRPPKHARKPKPR 431
>At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibitor
family protein low similarity to extensin [Volvox
carteri] GI:21992
Length = 312
Score = 25.8 bits (54), Expect = 9.2
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +3
Query: 144 NPDPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPP 251
+P P S PS+ P + P S P + + P PP
Sbjct: 37 SPSPPSSSPSSAPPSSLSPSSPPPLSLSPSSPPPPP 72
Score = 25.8 bits (54), Expect = 9.2
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +3
Query: 144 NPDPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPP 251
+P P S PS+ P + P S P + + P PP
Sbjct: 86 SPSPPSSSPSSAPPSSLSPSSPPPLSLSPSSPPPPP 121
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,117,563
Number of Sequences: 28952
Number of extensions: 160949
Number of successful extensions: 457
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 457
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 497853200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -