Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_P10
         (597 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23G7.05 |sui1|psu1|translation initiation factor eIF1|Schizo...   131   7e-32
SPBC16C6.05 |||translation initiation factor |Schizosaccharomyce...    35   0.010
SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Ma...    27   1.6  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    26   3.6  
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    26   4.8  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    26   4.8  
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi...    25   6.3  
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    25   8.4  

>SPBC23G7.05 |sui1|psu1|translation initiation factor
           eIF1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 109

 Score =  131 bits (317), Expect = 7e-32
 Identities = 62/110 (56%), Positives = 84/110 (76%), Gaps = 1/110 (0%)
 Frame = +3

Query: 123 SIQNLNTFDPFADAIKSSEDDVQD-GLVHVRIQQRNGRKTLTTVQGLSSEYDLKKIVRAC 299
           +IQN NT DPFAD   + +DD Q    +H+RIQQRNGRKTLTTVQGL  E+D K+I+RA 
Sbjct: 3   AIQNFNTVDPFAD---TGDDDAQPLNNIHIRIQQRNGRKTLTTVQGLPREFDQKRILRAL 59

Query: 300 KKEFACNGTVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHGF 449
           KK+FACNGT+V+  + GEV+QLQGDQR  + ++LT+   ++ + +K+HGF
Sbjct: 60  KKDFACNGTIVKDDDLGEVIQLQGDQRIKVMEFLTQQLGLQKKNIKIHGF 109


>SPBC16C6.05 |||translation initiation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 190

 Score = 34.7 bits (76), Expect = 0.010
 Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
 Frame = +3

Query: 201 VHVRIQQRNGRKTLTTVQGLSS-EYDLKKIVRACKKEFACNGTVVEHPEYGEVLQLQGDQ 377
           V ++  +R  RK +TTVQGL +   + KK  +    +FA   +V +  +  + + +QGD 
Sbjct: 99  VLIKTIERTKRKRVTTVQGLDAFGIETKKAAKMLANKFATGASVTKTADKKDEIVVQGDL 158

Query: 378 RENICQWLTKSGLVKPE 428
             +I  ++ +     PE
Sbjct: 159 NYDIFDFILEKFKEVPE 175


>SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 899

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 14/23 (60%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = +2

Query: 419 EARATKSSRLLGRH-AHTMFKKY 484
           E  +TKS  LLGRH AH+ F KY
Sbjct: 379 ELLSTKSDGLLGRHLAHSNFLKY 401


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
 Frame = -1

Query: 348 RTPGAPQRYRCTRTPSCMPARSSS---SHIPRTSPAPWSMFY 232
           R+   P +Y+C    SC  AR+SS   + +P  S   WS+F+
Sbjct: 409 RSRSCPSKYQCY---SCRCARNSSLEFTSLPGQSSDTWSIFW 447


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
           Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = -1

Query: 315 TRTPSCMPAR-SSSSHIPRTSPAP 247
           +R+PS  P    S+ HIPR SP+P
Sbjct: 385 SRSPSVDPNTVKSAQHIPRMSPSP 408


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
           synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -3

Query: 385 FSRWSPCSCSTSPYSGCSTTVPLHANSFLHARTIFFKSYSED 260
           FSR   C    +  S  S+T P +  + +   + F ++YSED
Sbjct: 748 FSRSMDCDSIKNALSVVSSTRPKNTTAVIDVDSSFCRNYSED 789


>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
           Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -1

Query: 360 AAPRRTPGAPQRYRCTRTPSCMPARSSSSHIPRTS 256
           A+PR TP  P  +   +  S +P +  SS  P T+
Sbjct: 33  ASPRLTPNLPPPFSVHQLQSFVPPQPPSSSSPSTT 67


>SPBC3F6.05 |rga1||GTPase activating protein
           Rga1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1150

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +1

Query: 331 WSTRSTARCCNCKATSARTFV 393
           +ST   ARCC C     R FV
Sbjct: 232 YSTLFAARCCGCDGPILRQFV 252


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,466,548
Number of Sequences: 5004
Number of extensions: 49475
Number of successful extensions: 151
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)