Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_P10
         (597 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47415| Best HMM Match : No HMM Matches (HMM E-Value=.)             138   2e-33
SB_23958| Best HMM Match : FG-GAP (HMM E-Value=0.055)                  35   0.043
SB_20270| Best HMM Match : Flavodoxin_1 (HMM E-Value=3.1e-35)          29   2.9  
SB_39015| Best HMM Match : Lectin_C (HMM E-Value=3.2e-28)              28   5.0  
SB_11872| Best HMM Match : C1_2 (HMM E-Value=5.5)                      28   5.0  
SB_382| Best HMM Match : Extensin_2 (HMM E-Value=0.61)                 28   6.6  
SB_9366| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.7  
SB_55766| Best HMM Match : Keratin_B2 (HMM E-Value=1.8)                27   8.7  

>SB_47415| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 584

 Score =  138 bits (335), Expect = 2e-33
 Identities = 65/103 (63%), Positives = 80/103 (77%), Gaps = 3/103 (2%)
 Frame = +3

Query: 150 PFADAIKS---SEDDVQDGLVHVRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACN 320
           PF DA K    S   VQ  ++HVRIQQRNGRKTLTT+QG+S EYD KK+V+A KK+FACN
Sbjct: 482 PFEDASKGDGESNTSVQRDVIHVRIQQRNGRKTLTTIQGISDEYDKKKLVKAFKKQFACN 541

Query: 321 GTVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHGF 449
           GTVV+HPEYGE +QLQGDQR +  ++L +  L K +Q+KVHGF
Sbjct: 542 GTVVDHPEYGECIQLQGDQRAHAQEFLLQIDLAKKDQIKVHGF 584


>SB_23958| Best HMM Match : FG-GAP (HMM E-Value=0.055)
          Length = 683

 Score = 35.1 bits (77), Expect = 0.043
 Identities = 17/40 (42%), Positives = 21/40 (52%)
 Frame = -1

Query: 288 RSSSSHIPRTSPAPWSMFYARSAAGFGRALDHLARRPPSF 169
           R ++S  P TS APW  F+     GF R LD+L    P F
Sbjct: 320 RHATSSGPITSGAPWGSFHPDPKTGFIRILDNLVMTEPKF 359


>SB_20270| Best HMM Match : Flavodoxin_1 (HMM E-Value=3.1e-35)
          Length = 724

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
 Frame = -1

Query: 387 CSRAGRLAVAAPRRTPGAPQRYRCTRTPSCMPA-RSSSSHIPRTSPAPWSM 238
           CS+ G        R P        T  PSC P       H+PR SP P+S+
Sbjct: 423 CSKQGADEYCRFVREPSLSLLELLTAFPSCFPPFERLLEHLPRLSPRPYSI 473


>SB_39015| Best HMM Match : Lectin_C (HMM E-Value=3.2e-28)
          Length = 856

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/40 (32%), Positives = 16/40 (40%)
 Frame = -3

Query: 376 WSPCSCSTSPYSGCSTTVPLHANSFLHARTIFFKSYSEDK 257
           W P  C    YS C  T+ +     LH   I     SED+
Sbjct: 802 WRPFHCDDKFYSICKLTLRIERRQKLHYSNILLTVQSEDE 841


>SB_11872| Best HMM Match : C1_2 (HMM E-Value=5.5)
          Length = 425

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 20/80 (25%), Positives = 33/80 (41%)
 Frame = -1

Query: 411 PI**ATDKCSRAGRLAVAAPRRTPGAPQRYRCTRTPSCMPARSSSSHIPRTSPAPWSMFY 232
           P+  A    S  G+   +  ++ PG    YRC  TP   P R S+  + R   +  ++  
Sbjct: 186 PVISAATSGSTIGKNISSPVKKPPGFISMYRCILTPPGSPKRLSAVLVARKRSSNRTVAS 245

Query: 231 ARSAAGFGRALDHLARRPPS 172
           ++ A     +     R PPS
Sbjct: 246 SKQARQHISSHSSPGRTPPS 265


>SB_382| Best HMM Match : Extensin_2 (HMM E-Value=0.61)
          Length = 314

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -1

Query: 309 TPSCMPARSSSSHIPRTSPAP 247
           +P  MP R+SS  +PR SP P
Sbjct: 43  SPQPMPGRNSSPIVPRASPQP 63


>SB_9366| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1221

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -1

Query: 360 AAPRRTPGAPQRYRCTRTPSCMPARSSSSHIPRTSPAPWS 241
           A+P ++  +P  ++  ++P   P RS S+  P + P P S
Sbjct: 411 ASPPQSVKSPIHFQANKSPPFHPQRSPSASKPSSRPPPLS 450


>SB_55766| Best HMM Match : Keratin_B2 (HMM E-Value=1.8)
          Length = 245

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 30/106 (28%), Positives = 44/106 (41%), Gaps = 9/106 (8%)
 Frame = +1

Query: 118 VCPSRI*THSTHSPMLSKARRTTCKMV*CT----SESSSGTGVKH*PRCRACPRNMT*RR 285
           VCP    T+++ S   S      C ++ CT    S +SSG+ +        CP N     
Sbjct: 40  VCPIIRCTYTSDSSTTSATTIGVCSIISCTYTSNSATSSGSYIISSTTIGVCPTN----- 94

Query: 286 SCGHARRSSRATVPLWSTRSTARCC-----NCKATSARTFVSGSLN 408
           SC + + S+  +    ST S+A  C      C  TS+ T   G  N
Sbjct: 95  SCTNLKDSTSGS----STISSATICFGPTNRCTTTSSTTISVGPTN 136


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,880,664
Number of Sequences: 59808
Number of extensions: 419855
Number of successful extensions: 1204
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1203
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)