Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_P09
(591 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0216 - 14954047-14956098 33 0.23
04_03_0922 + 20834195-20836603 31 0.91
08_01_0663 + 5721902-5723176,5724162-5724233,5724405-5724560,572... 29 2.1
04_03_0916 + 20794240-20794246,20794585-20796545 29 2.1
07_01_0476 - 3593555-3594253,3594684-3594850,3594866-3594964,359... 28 6.4
04_03_0913 + 20777859-20780309 28 6.4
12_02_0244 - 16241243-16241279,16241781-16241848,16241930-162420... 27 8.5
11_04_0041 - 12690287-12690816,12691087-12691378 27 8.5
09_03_0172 - 13072575-13073800,13075919-13076054 27 8.5
07_01_0646 + 4853546-4853623,4853732-4855357,4855467-4855751,485... 27 8.5
01_01_1208 + 9733010-9733114,9733920-9733979,9735254-9736280,973... 27 8.5
>11_04_0216 - 14954047-14956098
Length = 683
Score = 32.7 bits (71), Expect = 0.23
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = -3
Query: 574 FGKRETSAGFPRGLNERRIELLPTGVEVQRCGRSLEEIQFSPQRVV 437
FG GF G+ E+R+E P VE+++C + + +R++
Sbjct: 249 FGSSSDGDGFSDGVEEKRLECDPVSVEIKKCEPPAKSLSSVSRRIL 294
>04_03_0922 + 20834195-20836603
Length = 802
Score = 30.7 bits (66), Expect = 0.91
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +1
Query: 277 QPRFQCQSIRH*KPAKYSSSSELQHCRCRSGLHVQG-QDWCICDR 408
QP+ QC P + +EL C+C G ++ +DW + DR
Sbjct: 290 QPKVQCDVFAVCGPFTICNDNELGFCKCMKGFSIKSPKDWELDDR 334
>08_01_0663 +
5721902-5723176,5724162-5724233,5724405-5724560,
5724655-5724844,5725173-5725255
Length = 591
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -3
Query: 382 LEHVVHSGTDSVEVRNLRNIWQVFSGECFGTEIVVVVME 266
LE + HSG + +V L N W ++ F + VV+V E
Sbjct: 417 LELLAHSGEVNKQVPRLSNFWNMYFTHHFQVDTVVMVRE 455
>04_03_0916 + 20794240-20794246,20794585-20796545
Length = 655
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = +1
Query: 277 QPRFQCQSIRH*KPAKYSSSSELQHCRCRSGLHVQG-QDWCICDR 408
QP+ QC P + +EL +C C G + +DW + DR
Sbjct: 135 QPKAQCDVYSICGPFTVCTDNELPNCNCIKGFTITSLEDWVLEDR 179
>07_01_0476 -
3593555-3594253,3594684-3594850,3594866-3594964,
3595620-3595806,3595880-3595948,3596551-3596752,
3597124-3597362,3598374-3598637
Length = 641
Score = 27.9 bits (59), Expect = 6.4
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +1
Query: 4 LQGAPASGCTNCQLRRHLRCYGQGTYN 84
L G P G N + +LRCYG +Y+
Sbjct: 302 LNGVPGCGFLNHAINLYLRCYGSLSYH 328
>04_03_0913 + 20777859-20780309
Length = 816
Score = 27.9 bits (59), Expect = 6.4
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Frame = +1
Query: 277 QPRFQCQSIRH*KPAKYSSSSELQHCRCRSGLHVQG-QDWCICDR 408
QP+ C P +EL HC C G V +DW + DR
Sbjct: 288 QPKAPCDVYAICGPFTVCIDNELPHCNCIKGFTVTSLEDWELEDR 332
>12_02_0244 -
16241243-16241279,16241781-16241848,16241930-16242032,
16242095-16242256,16242305-16242369,16242547-16242612,
16242738-16242829,16243029-16243134,16243231-16243279,
16243387-16243540,16243661-16243687,16243797-16243959,
16244621-16244701
Length = 390
Score = 27.5 bits (58), Expect = 8.5
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Frame = -3
Query: 400 RCTNLVLEHVVHSGTDSVEVRN--LRNIWQVFSGECF 296
R NLV+++V HSG + +++ LRN+ FS CF
Sbjct: 354 RLQNLVMQNVDHSGGEFIDLLQGLLRNMLFGFSRICF 390
>11_04_0041 - 12690287-12690816,12691087-12691378
Length = 273
Score = 27.5 bits (58), Expect = 8.5
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +3
Query: 468 SRLRPHRWTSTPVGRSSIRLSLSPRGNPALVSRFPNIS 581
SRLRP+R S P RS + +S R P+ P S
Sbjct: 138 SRLRPNRCLSEPFRRSGTLVFMSGREEPSFAEPEPEPS 175
>09_03_0172 - 13072575-13073800,13075919-13076054
Length = 453
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -3
Query: 448 QRVVITIKDIGVSGGRRCTNLVLEHVV 368
+ V++T+KD+ GGR CT L E +
Sbjct: 281 RNVILTMKDLTAVGGRFCTYLSKEKAI 307
>07_01_0646 +
4853546-4853623,4853732-4855357,4855467-4855751,
4856131-4856277
Length = 711
Score = 27.5 bits (58), Expect = 8.5
Identities = 18/58 (31%), Positives = 26/58 (44%)
Frame = +2
Query: 23 AGALTVNSDGTSGAMVKVPITGNENHRLSALGSVDLTNQMKLGAATAGLAYDNVNGHG 196
AG + + G V + G +NH +S +G GA TAG AY+ +N G
Sbjct: 178 AGHSSTSISAALGMAVARDLLGKKNHVISVIGD---------GAMTAGQAYEAMNNSG 226
>01_01_1208 +
9733010-9733114,9733920-9733979,9735254-9736280,
9736332-9736621
Length = 493
Score = 27.5 bits (58), Expect = 8.5
Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = -1
Query: 189 PFTLS*ANPAVAAPNFIWLVRSTEPRALSL*FSF-PVIGTLTIAPEVPSELTVSAPACRR 13
P TL +PA AA + IW +P + SF P + APE P L + A R
Sbjct: 426 PKTLRIDDPAEAAKSSIWATLGIKPDDKGIFKSFQPNVAKNGTAPESPQALQANPAAFSR 485
Query: 12 T 10
+
Sbjct: 486 S 486
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,775,547
Number of Sequences: 37544
Number of extensions: 400987
Number of successful extensions: 1023
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1006
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1023
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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