Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_P09
         (591 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39468| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.2  
SB_15021| Best HMM Match : Zona_pellucida (HMM E-Value=0)              30   1.6  
SB_43991| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_22964| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_30460| Best HMM Match : DSPc (HMM E-Value=2.5e-38)                  28   6.6  
SB_58205| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  

>SB_39468| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1778

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 2/86 (2%)
 Frame = +2

Query: 11  VRRQAGALTVNSDGTSGAMVKVPITGNENHRLSALGSVDLTNQMKLGAATAGLAY-DNVN 187
           V+ +    T+N    +   +K  + GN +  L A  S    N  K G     ++Y DN+N
Sbjct: 662 VKEEDSKATINCIRNNNTYIKQSVEGNNSFSLDASSS---ENVRKEGDKDVVISYSDNMN 718

Query: 188 GHGATLT-KTHIPGFGDKMTAAGKVN 262
              A  T +  IPG   K  +  KVN
Sbjct: 719 NSKAANTDQFGIPGSDSKTGSDSKVN 744


>SB_15021| Best HMM Match : Zona_pellucida (HMM E-Value=0)
          Length = 751

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 20/58 (34%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
 Frame = +2

Query: 194 GATLTKTHIPGFGDKMTAAGKVNLFHNDNHDFSAKAFATKNLPNIPQ-VPNFNTVGAG 364
           G+T   T IPG G    + GK ++  N  H  S  A         P  VP   T GAG
Sbjct: 322 GSTTKTTKIPGPGKIHISTGKPSITDNTKHKTSPSADGKGGKGEEPTIVPEMTTQGAG 379


>SB_43991| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1149

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 21/64 (32%), Positives = 31/64 (48%)
 Frame = +3

Query: 339  RTSTLSVPEWTTCSRTRLVHLRPPLTPMSLIVMTTLWGEN*ISSRLRPHRWTSTPVGRSS 518
            ++  +S P W   +RT L+H       + L  +  L+G+   SS L  HRW S  VG S 
Sbjct: 1083 QSKLMSTPHWNQSARTSLLH------SVCLRYIEVLFGK---SSSL--HRWGSPKVGESP 1131

Query: 519  IRLS 530
             R +
Sbjct: 1132 TRFA 1135


>SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3592

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 20/59 (33%), Positives = 25/59 (42%)
 Frame = -3

Query: 568 KRETSAGFPRGLNERRIELLPTGVEVQRCGRSLEEIQFSPQRVVITIKDIGVSGGRRCT 392
           K E  A  P  L  R    L   + +  CG   + IQ S  R V T+    VS G +CT
Sbjct: 304 KTEIQASHPTALIRRSCICLMRALALT-CGLHADSIQTSQVRTVSTLLHKLVSAGTKCT 361


>SB_22964| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1506

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
 Frame = +2

Query: 227 FGDKMTAAGKVNLFH---NDNHDFSAKAFATKNLPNIPQVPNFNTV 355
           FGDK   A  +  FH   ND  D S  +  T+ + ++  +P + TV
Sbjct: 587 FGDKWIGANTIRAFHHTDNDGIDASENSNLTRIIFDLSTLPMYETV 632


>SB_30460| Best HMM Match : DSPc (HMM E-Value=2.5e-38)
          Length = 550

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 2/90 (2%)
 Frame = +2

Query: 59  GAMVKVPITGNENHRLSALGSVDLTNQMKLGAATAGLAYDNVNGHGATLTKTHIPGFGDK 238
           G  V   +T  E  +L ALG   +T+ +     T  L++ N +   A+  K+ I   G  
Sbjct: 401 GIYVGGAVTAMEEDQLVALG---VTHVLNAAQGTKRLSHVNTD---ASFYKSGIIFHGIP 454

Query: 239 MTAAG--KVNLFHNDNHDFSAKAFATKNLP 322
            T     K+N + ++  DF A A  TKN P
Sbjct: 455 ATDVFMFKLNKYFDEAADFIASAVGTKNCP 484


>SB_58205| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 153

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/30 (50%), Positives = 15/30 (50%)
 Frame = +1

Query: 10  GAPASGCTNCQLRRHLRCYGQGTYNWKRKS 99
           G PA    N QL R  RC    TY W RKS
Sbjct: 73  GKPAYFAKNLQLDRK-RCLYPKTYTWDRKS 101


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,968,451
Number of Sequences: 59808
Number of extensions: 438941
Number of successful extensions: 1087
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1000
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1087
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1434459094
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)