Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_P08
(675 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomy... 274 8e-75
SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyc... 163 2e-41
SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha 3|Sch... 157 1e-39
SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomy... 135 6e-33
SPBC646.16 |||20S proteasome component alpha 1|Schizosaccharomyc... 118 1e-27
SPCC1795.04c |||20S proteasome component alpha 7|Schizosaccharom... 116 4e-27
SPAC6G10.04c |||20S proteasome component alpha 6 subunit Pre5|Sc... 113 2e-26
SPAC23D3.07 |pup1||20S proteasome component beta 2|Schizosacchar... 37 0.003
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 33 0.029
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c... 31 0.12
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz... 28 1.4
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe... 27 2.5
SPAC144.03 |ade2|min10, min3|adenylosuccinate synthetase Ade2|Sc... 27 3.3
SPCC285.05 |||purine nucleoside transporter |Schizosaccharomyces... 26 4.3
SPAPB1A11.01 ||SPAPB24D3.11|membrane transporter|Schizosaccharom... 26 5.7
SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 5.7
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca... 26 5.7
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual 26 5.7
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 25 10.0
SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz... 25 10.0
SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|... 25 10.0
>SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 245
Score = 274 bits (672), Expect = 8e-75
Identities = 138/210 (65%), Positives = 166/210 (79%), Gaps = 1/210 (0%)
Frame = +2
Query: 2 ERYSFSLTTFSPSGKLVQIEYALAAVAAGGTSVGIKASNGVVIATENKHKSILYDEHSVN 181
++Y+FSLTTFSP+GKLVQIEYAL AV AG TSVGIKA++GVV+ATE K S L S+
Sbjct: 3 DKYAFSLTTFSPNGKLVQIEYALNAVNAGVTSVGIKATDGVVLATEKKPTSELAIGASLE 62
Query: 182 KVEMITGHIGMVYSGMGPDYRLLVTQARKMAQQYYL-MYHEPIPTAQLVQRVATVMQEYT 358
KV IT IGMVYSGMGPD+R+LV ++RK+AQ Y +Y+E PT LVQ +A+VMQE T
Sbjct: 63 KVCAITPDIGMVYSGMGPDFRVLVDKSRKVAQTTYKKIYNEYPPTKILVQEIASVMQEST 122
Query: 359 QSGGVRPFGVSLLICGWENDRPYLFQCDPSGAYFAWKATAMGKNFNNGKTFLEKRYTEDL 538
QSGGVRPFGVSLL+ G + P L+Q DPSG YFAWKATA+GK+ KTFLEKRY ++L
Sbjct: 123 QSGGVRPFGVSLLVAGMDEKGPSLYQVDPSGTYFAWKATAIGKSSTAAKTFLEKRYNDEL 182
Query: 539 ELDDAVHTAILTLKEGFEGQMTADNIEVGI 628
ELDDAVHTAIL LKE FEG++T DNIE+ +
Sbjct: 183 ELDDAVHTAILALKETFEGELTEDNIEIAV 212
>SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 259
Score = 163 bits (397), Expect = 2e-41
Identities = 81/211 (38%), Positives = 129/211 (61%), Gaps = 2/211 (0%)
Frame = +2
Query: 8 YSFSLTTFSPSGKLVQIEYALAAVAAGGTSVGIKASNGVVIATENKHKSILYDEHSVNKV 187
Y +L+ FSP G+L+Q+EY AV G T++ ++ + +VI E K+ L + + K+
Sbjct: 4 YDRALSVFSPDGRLLQVEYGQEAVRRGTTAIALRGNECIVIGVERKNVPKLQNVSNFQKI 63
Query: 188 EMITGHIGMVYSGMGPDYRLLVTQARKMAQQYYLMYHEPIPTAQLVQRVATVMQEYTQSG 367
M+ H+ + ++G+ D R+L+ +AR AQ + L +P+ L + VA V Q+YTQSG
Sbjct: 64 AMVDNHVCLAFAGLNADARILIDKARVEAQNHKLNLADPVSIEYLTRYVAGVQQKYTQSG 123
Query: 368 GVRPFGVSLLICGWE--NDRPYLFQCDPSGAYFAWKATAMGKNFNNGKTFLEKRYTEDLE 541
GVRPFGVS LI G++ ++ P ++Q +P+G Y AWKATA+G+ + +LEK + E L
Sbjct: 124 GVRPFGVSTLIAGFDVGDNTPRVYQTEPAGIYNAWKATAIGRASKAAREYLEKNWKEGLS 183
Query: 542 LDDAVHTAILTLKEGFEGQMTADNIEVGICD 634
D+ +H A+ +L E Q + NIE+ I D
Sbjct: 184 RDETIHLAVSSLLEVV--QTASGNIELAIMD 212
>SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 248
Score = 157 bits (381), Expect = 1e-39
Identities = 81/207 (39%), Positives = 125/207 (60%), Gaps = 3/207 (1%)
Frame = +2
Query: 8 YSFSLTTFSPSGKLVQIEYALAAVAAGGTSVGIKASNGVVIATENKHKS-ILYDEHSVNK 184
Y T FSP G+L Q+EYAL A+ G ++GI A +G+V+A E K S +L E S K
Sbjct: 5 YDSRTTIFSPEGRLYQVEYALEAINHAGVALGIVAKDGIVLAAEKKVTSKLLEQEESAEK 64
Query: 185 VEMITGHIGMVYSGMGPDYRLLVTQARKMAQQYYLMYHEPIPTAQLVQRVATVMQEYTQS 364
+ I ++ +G+ D +L+ AR++ QQY ++E +P QLV+RV + Q YTQ
Sbjct: 65 LYHIGDNMLCAVAGLTADANILINYARRVGQQYLQTFNEEMPCEQLVRRVCDLKQGYTQY 124
Query: 365 GGVRPFGVSLLICGWENDRPY-LFQCDPSGAYFAWKATAMGKNFNNGKTFLEKRYTEDLE 541
GG+RPFGVS L GW++ R Y LFQ +PSG Y +W+A ++G N + ++ + + Y +D+
Sbjct: 125 GGLRPFGVSFLYAGWDHIRGYQLFQSNPSGNYGSWQANSIGGNSTSVQSLMRQEYKDDIN 184
Query: 542 LDDAVHTAILTLKEGFE-GQMTADNIE 619
LD+A A+ L + + +T + IE
Sbjct: 185 LDEASAMAVKFLSKTLDSNSLTHEKIE 211
>SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 247
Score = 135 bits (326), Expect = 6e-33
Identities = 70/218 (32%), Positives = 113/218 (51%), Gaps = 6/218 (2%)
Frame = +2
Query: 8 YSFSLTTFSPSGKLVQIEYALAAVAAGGTSVGIKASNGVVIATENKHKSILYDEHSVNKV 187
Y + TFSP G+L Q+EYA+ A+ G T++G+K + VV+ E + S L + HSV K+
Sbjct: 8 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGVKTKDAVVLGVEKRLTSPLMESHSVEKL 67
Query: 188 EMITGHIGMVYSGMGPDYRLLVTQARKMAQQYYLMYHEPIPTAQLVQRVATVMQEYTQSG 367
I HIG SG+ D R ++ AR Q + Y EP Q + + + +
Sbjct: 68 FEIDSHIGCAISGLTADARTIIEHARVQTQNHRFTYDEPQGIESTTQSICDLALRFGEGE 127
Query: 368 G------VRPFGVSLLICGWENDRPYLFQCDPSGAYFAWKATAMGKNFNNGKTFLEKRYT 529
RPFGV+LLI G + P L+ +PSG YF ++A A+G K+ L K +
Sbjct: 128 DGEERIMSRPFGVALLIAGIDEHGPQLYHSEPSGTYFRYEAKAIGSGSEPAKSELVKEFH 187
Query: 530 EDLELDDAVHTAILTLKEGFEGQMTADNIEVGICDASG 643
+D+ L++A + L++ E ++ + N+++ A G
Sbjct: 188 KDMTLEEAEVLILKVLRQVMEEKLDSKNVQLAKVTAEG 225
>SPBC646.16 |||20S proteasome component alpha 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 244
Score = 118 bits (283), Expect = 1e-27
Identities = 74/225 (32%), Positives = 113/225 (50%), Gaps = 6/225 (2%)
Frame = +2
Query: 17 SLTTFSPSGKLVQIEYALAAVA-AGGTSVGIKASNGVVIATENKHKSILYDEHSVNKVEM 193
++T FSP G+L Q+EYA A AG TSVG+ N + ++ K L D +V V
Sbjct: 10 TITVFSPEGRLYQVEYAFKAFNNAGITSVGVTGKNCACVISQKKVPDKLIDASTVKHVFP 69
Query: 194 ITGHIGMVYSGMGPDYRLLVTQARKMAQQYYLMYHEPIPTAQLVQRVATVMQEYTQSGGV 373
IT IG V +G D R V++AR A ++ P+P L +R+A + Q TQ +
Sbjct: 70 ITKGIGCVMTGSIADARAQVSRARSEAAEFEYKNGYPMPCDVLAKRMANIAQVSTQRAAM 129
Query: 374 RPFGVSLLICGWEND-RPYLFQCDPSGAYFAWKATAMGKNFNNGKTFLEKRYTED---LE 541
RP GV++ + +++ P LF+ DP+G Y +KAT+ G +LEKR+ +D
Sbjct: 130 RPLGVAMTLVAVDDEIGPSLFKLDPAGFYIGYKATSAGPKQTETINWLEKRFKKDGIPSN 189
Query: 542 LDDAVHTAILTLKEGFEGQMTADNIEVGIC-DASGFRKLEPAHVK 673
L D V T I L + +++G+ D FR L ++
Sbjct: 190 LTDTVETGIQALMSSLSTDFKSTELQIGVVEDDKPFRVLSVEEIE 234
>SPCC1795.04c |||20S proteasome component alpha
7|Schizosaccharomyces pombe|chr 3|||Manual
Length = 253
Score = 116 bits (278), Expect = 4e-27
Identities = 61/179 (34%), Positives = 93/179 (51%)
Frame = +2
Query: 29 FSPSGKLVQIEYALAAVAAGGTSVGIKASNGVVIATENKHKSILYDEHSVNKVEMITGHI 208
FSP G+L Q EYA AV T +GIK +GV++A E S L N++ + HI
Sbjct: 14 FSPDGRLFQAEYAYKAVENASTCIGIKCEDGVILALEKVVTSKLLKPRVNNRIGSVDRHI 73
Query: 209 GMVYSGMGPDYRLLVTQARKMAQQYYLMYHEPIPTAQLVQRVATVMQEYTQSGGVRPFGV 388
G+ +G PD + +V +AR A + Y PIP + R+ +Q +T VRPFGV
Sbjct: 74 GIATTGFIPDGQHIVKRARDEATSWRDNYGSPIPGTVIADRLGNYVQLFTCYSSVRPFGV 133
Query: 389 SLLICGWENDRPYLFQCDPSGAYFAWKATAMGKNFNNGKTFLEKRYTEDLELDDAVHTA 565
+ ++++ P+L+ +P+G Y+ + A GK + LEK L++ DAV A
Sbjct: 134 MSFVATYDSEGPHLYMVEPNGVYWGYNGAAAGKGRQVARNELEKLNFSSLKMKDAVKEA 192
>SPAC6G10.04c |||20S proteasome component alpha 6 subunit
Pre5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 272
Score = 113 bits (273), Expect = 2e-26
Identities = 60/212 (28%), Positives = 110/212 (51%), Gaps = 4/212 (1%)
Frame = +2
Query: 5 RYSFSLTTFSPSGKLVQIEYALAAVAAGGTSVGIKASNGVVIATENKHKSILYDEHSVNK 184
+Y TT+SP G+L Q+EYAL A+ G +VG+ + V+ ++ L K
Sbjct: 5 QYDGDATTWSPQGRLHQVEYALEAIKQGSATVGLVSKTHAVLVALKRNAEELSSYQK--K 62
Query: 185 VEMITGHIGMVYSGMGPDYRLLVTQARKMAQQYYLMYHEPIPTAQLVQRVATVMQEYTQS 364
+ I HIG+ +G+ PD R+L ++ A ++ PIP +L+ +VA Q TQ
Sbjct: 63 LIRIDDHIGIAIAGLAPDARVLSNYMKQEALSSKTLFTRPIPVRRLMSKVAEKAQINTQE 122
Query: 365 GGVRPFGVSLLICGWENDRPYLFQCDPSGAYFAWKATAMGKNFNNGKTFLEKRYT--EDL 538
G RP+GV L+ G++ P+L + PSG + T+MG + +T++E+ D
Sbjct: 123 YGRRPYGVGFLVIGYDESGPHLLEFQPSGLVLEYLGTSMGSRSQSARTYIERNLDTFPDS 182
Query: 539 ELDDAVHTAILTLKEGF--EGQMTADNIEVGI 628
++ + +A+ L++ + ++T +N+ + +
Sbjct: 183 SREELILSALRALRDTLSKDQELTEENVSISV 214
>SPAC23D3.07 |pup1||20S proteasome component beta
2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 267
Score = 36.7 bits (81), Expect = 0.003
Identities = 44/189 (23%), Positives = 80/189 (42%), Gaps = 2/189 (1%)
Frame = +2
Query: 74 AVAAGGTSVGIKASNGVVIATENKHKS--ILYDEHSVNKVEMITGHIGMVYSGMGPDYRL 247
A + G T VG+ A + +V+ + + + I+ D++ K+ +I+ +I +G D
Sbjct: 31 ATSTGTTIVGVIAKDCIVLGADTRATAGPIIADKNC-KKLHLISPNIWCAGAGTAADTEF 89
Query: 248 LVTQARKMAQQYYLMYHEPIPTAQLVQRVATVMQEYTQSGGVRPFGVSLLICGWENDRPY 427
VT + + +Y P ++V + + Q + G G L++ G++ P+
Sbjct: 90 -VTSMISSNIELHSLYTNRKP--RVVTALTMLKQHLFRYQG--HIGAYLVLGGYDCKGPH 144
Query: 428 LFQCDPSGAYFAWKATAMGKNFNNGKTFLEKRYTEDLELDDAVHTAILTLKEGFEGQMTA 607
LF G+ A+G + LE +Y DLE H A+ +KE E +
Sbjct: 145 LFTIAAHGSSDKLPYVALGSGSLAAISVLETKYQPDLER----HEAMELVKEAIEAGIFN 200
Query: 608 DNIEVGICD 634
D CD
Sbjct: 201 DLGSGSNCD 209
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 33.5 bits (73), Expect = 0.029
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Frame = +2
Query: 161 YDEHSVNKVEMITG----HIGMVYSGMGPDYRLLVTQARKMAQQYYLMYHEPIPTAQLVQ 328
Y +H+VNK+++IT V D+ L T RK+ YY +Y P +L++
Sbjct: 1589 YSQHTVNKIQIITNITLDFDSFVLRTTVNDFLFLQTILRKIYNFYYALYDVPTTDVELLK 1648
Query: 329 R 331
R
Sbjct: 1649 R 1649
>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1687
Score = 31.5 bits (68), Expect = 0.12
Identities = 16/40 (40%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Frame = -1
Query: 222 EYTIPIWPVIISTLLTLCSSYKMLLCLFSVAIT--TPLDA 109
++ +P+WP+++S LL + SY C+ +VAI+ T LDA
Sbjct: 1505 KHLLPLWPIVVSELLIIFKSY----CMPNVAISKETLLDA 1540
>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 547
Score = 27.9 bits (59), Expect = 1.4
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -1
Query: 201 PVIISTLLTLCSSYKMLLCLFSVAITTPLDAFMPTEVPPAA 79
P +++T CSS L L + PL A +P + PP A
Sbjct: 265 PTLLNTYGNRCSSTDTLSSLSRLTSQDPLKASLPLQSPPLA 305
>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 969
Score = 27.1 bits (57), Expect = 2.5
Identities = 16/67 (23%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Frame = -3
Query: 376 TDAS*LSIFLHDGRHSLDQLRCGYRLVVHQVVLLG--HFPGLCDEQTIIRAHAGVHHSYM 203
TD + +I +H G S + G ++ +G +P + + + +H G+ ++Y
Sbjct: 43 TDNASAAIDVHIGSQSNPRELLGLAHFCEHLLFMGTKKYPDENEYRKYLESHNGISNAYT 102
Query: 202 ASNHFNF 182
ASN+ N+
Sbjct: 103 ASNNTNY 109
>SPAC144.03 |ade2|min10, min3|adenylosuccinate synthetase
Ade2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 26.6 bits (56), Expect = 3.3
Identities = 22/89 (24%), Positives = 44/89 (49%), Gaps = 4/89 (4%)
Frame = +2
Query: 101 GIKASNGVVIATENKHKSILYDEH----SVNKVEMITGHIGMVYSGMGPDYRLLVTQARK 268
G+K + + I+ + H +++D H ++N+ E+ IG G+GP Y T+A +
Sbjct: 103 GLKCRDRIFIS-DRAH--LVFDYHQRADALNEAELGKQSIGTTGKGIGPAYS---TKATR 156
Query: 269 MAQQYYLMYHEPIPTAQLVQRVATVMQEY 355
+ + +YH A+ + VA + + Y
Sbjct: 157 SGIRVHHLYHWAEFEARYRKNVADLQKRY 185
>SPCC285.05 |||purine nucleoside transporter |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 348
Score = 26.2 bits (55), Expect = 4.3
Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Frame = +2
Query: 422 PYLFQCDPSGAYFAWKATAMG---KNFNNGKTFLEKRYTEDLELDDAVHTAILTLKEGFE 592
P++ QCD + W T MG N N T Y + D+A TA+ + F+
Sbjct: 227 PFITQCDTATGDNYWAGTYMGDFVSNITNVLTNSTGHYCTTQQEDNASLTAL--TRASFD 284
Query: 593 GQMTADNIEV 622
G + + + +
Sbjct: 285 GLVNINRVVI 294
>SPAPB1A11.01 ||SPAPB24D3.11|membrane
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 495
Score = 25.8 bits (54), Expect = 5.7
Identities = 8/29 (27%), Positives = 17/29 (58%)
Frame = -1
Query: 204 WPVIISTLLTLCSSYKMLLCLFSVAITTP 118
WP+ I + T+ S+ +LC++ ++ P
Sbjct: 33 WPIRIRIINTIIISFMTMLCMYGSSVFMP 61
>SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 345
Score = 25.8 bits (54), Expect = 5.7
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +2
Query: 137 ENKHKSILYDEHSVNKVEMITGHIGMVYSGMGPDYRLLVTQARK 268
EN+ + + + N +E +T HI Y G G + T +RK
Sbjct: 21 ENRKEEVSTLQDMANDLEKLTDHIEATYIGRGVPHDHAKTGSRK 64
>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 2410
Score = 25.8 bits (54), Expect = 5.7
Identities = 7/34 (20%), Positives = 19/34 (55%)
Frame = -1
Query: 219 YTIPIWPVIISTLLTLCSSYKMLLCLFSVAITTP 118
+ I +W +++ L + ++ ++C+F V + P
Sbjct: 2241 FYIVLWALLLGVLAWISRTHSWIICVFGVGLGAP 2274
>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1097
Score = 25.8 bits (54), Expect = 5.7
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = -3
Query: 544 QFQILGIPLFQERFPVVKVFPHRSRL 467
+F + IP ++ FPV K+ PH++ +
Sbjct: 238 RFTVFLIPTVRQIFPVSKLLPHKNAI 263
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 25.0 bits (52), Expect = 10.0
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = -2
Query: 584 PPXASGSPCGQHHPVPDP 531
PP + +P +HHP P P
Sbjct: 731 PPTPAPTPAVKHHPPPPP 748
>SPBC354.05c |sre2||membrane-tethered transcription factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 793
Score = 25.0 bits (52), Expect = 10.0
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = -1
Query: 513 RNVFPLLKFFPIAVAFQAKYAPDGSH 436
RNV P+LK I Q Y PD H
Sbjct: 546 RNVPPILKRSSIGTPSQQAYFPDAPH 571
>SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 552
Score = 25.0 bits (52), Expect = 10.0
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -3
Query: 634 VTDTHFDIIRRHLTLEPLLXRQDRRVDSIIQFQIL 530
V D F ++ LEPL +QD+R+ + F +L
Sbjct: 56 VLDETFSFMQEAKDLEPLTPKQDKRLRWKLYFTVL 90
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,862,057
Number of Sequences: 5004
Number of extensions: 61449
Number of successful extensions: 178
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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