Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_P08
         (675 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39285| Best HMM Match : Proteasome (HMM E-Value=0)                 136   2e-32
SB_47434| Best HMM Match : Proteasome (HMM E-Value=4.3e-17)            95   3e-20
SB_31216| Best HMM Match : Proteasome (HMM E-Value=2.8e-35)            79   4e-15
SB_40084| Best HMM Match : No HMM Matches (HMM E-Value=.)              61   9e-10
SB_40821| Best HMM Match : No HMM Matches (HMM E-Value=.)              41   8e-04
SB_46004| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.040
SB_40390| Best HMM Match : BON (HMM E-Value=0.68)                      31   1.1  
SB_19824| Best HMM Match : zf-C2H2 (HMM E-Value=1.4e-26)               30   1.5  
SB_10931| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_22569| Best HMM Match : NAF (HMM E-Value=6.2)                       29   3.4  
SB_30707| Best HMM Match : ARID (HMM E-Value=4e-35)                    29   4.5  
SB_50741| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_166| Best HMM Match : Myb_DNA-binding (HMM E-Value=6.7)             28   6.0  
SB_58926| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  
SB_28550| Best HMM Match : Fer2_2 (HMM E-Value=2.49992e-42)            28   7.9  
SB_15475| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                28   7.9  

>SB_39285| Best HMM Match : Proteasome (HMM E-Value=0)
          Length = 215

 Score =  136 bits (328), Expect = 2e-32
 Identities = 66/160 (41%), Positives = 96/160 (60%), Gaps = 1/160 (0%)
 Frame = +2

Query: 8   YSFSLTTFSPSGKLVQIEYALAAVAAGGTSVGIKASNGVVIATENKHKSILYDEHSVNKV 187
           Y  ++T FSP G L Q+EYA  AV  G T+VG++ +N VV+  E K  + L +  +V K+
Sbjct: 5   YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGNNIVVLGVERKAVAKLQEPRTVRKI 64

Query: 188 EMITGHIGMVYSGMGPDYRLLVTQARKMAQQYYLMYHEPIPTAQLVQRVATVMQEYTQSG 367
             +  H+ M ++G+  D R+LV +AR   Q + L   +P+    + + +AT+ Q YTQS 
Sbjct: 65  CTLDDHVLMAFAGLTADARILVNKARVECQSHKLTVEDPVTLEYITRFIATLKQRYTQSN 124

Query: 368 GVRPFGVSLLICGWEND-RPYLFQCDPSGAYFAWKATAMG 484
           G RPFG+S LI G++ D  P L+Q DPSG Y AWK    G
Sbjct: 125 GRRPFGISTLIVGFDFDGTPRLYQTDPSGTYHAWKVVQSG 164


>SB_47434| Best HMM Match : Proteasome (HMM E-Value=4.3e-17)
          Length = 308

 Score = 95.5 bits (227), Expect = 3e-20
 Identities = 49/132 (37%), Positives = 72/132 (54%)
 Frame = +2

Query: 5   RYSFSLTTFSPSGKLVQIEYALAAVAAGGTSVGIKASNGVVIATENKHKSILYDEHSVNK 184
           RY  S + FSP G++ Q+EYA  AV   GT++ I+  +GVV   E    S LY+  +  +
Sbjct: 136 RYDLSASQFSPDGRVFQVEYANKAVENSGTAIAIRCKDGVVFGVEKLVLSKLYEYGANKR 195

Query: 185 VEMITGHIGMVYSGMGPDYRLLVTQARKMAQQYYLMYHEPIPTAQLVQRVATVMQEYTQS 364
           +  I  HIGM  +G+  D R +V  AR+ A  Y  +Y  PIP   LV RV+  +  +T  
Sbjct: 196 IFHIDTHIGMAIAGLIADSRQIVATAREEAANYRSVYGSPIPLKYLVNRVSGFIHAFTLY 255

Query: 365 GGVRPFGVSLLI 400
             +RPFG  + +
Sbjct: 256 SAMRPFGCRIYV 267


>SB_31216| Best HMM Match : Proteasome (HMM E-Value=2.8e-35)
          Length = 224

 Score = 78.6 bits (185), Expect = 4e-15
 Identities = 62/223 (27%), Positives = 100/223 (44%), Gaps = 6/223 (2%)
 Frame = +2

Query: 20  LTTFSPSGKLVQIEYALAAVAAGG-TSVGIKASNGVVIATENKHKSILYDEHSVNKVEMI 196
           +T FSP G+L       +    GG TSVGI+ ++  V+ T+              KV + 
Sbjct: 13  ITIFSPEGRLYPSRVCFSGDQPGGLTSVGIRGADSAVVVTQK-------------KVPLP 59

Query: 197 TGHIGMVYSGMGPDYRLLVTQARKMAQQYYLMYHEPIPTAQLVQRVATVMQEYTQSGGVR 376
                        D R  V +AR  A  +   +   IP   L +R+A + Q YTQ+  +R
Sbjct: 60  IPQA---------DSRSQVQRARYEAANWKYKFGYEIPVDMLCKRIADISQVYTQNAEMR 110

Query: 377 PFGVSLLICGWENDR-PYLFQCDPSGAYFAWKATAMGKNFNNGKTFLEKRYTED--LELD 547
           P G  +++ G + ++ P L++ DP+G +  +KA ++G       +FLEK+  +      +
Sbjct: 111 PLGCGMILIGIDEEKGPQLYKTDPAGYFCGFKACSVGVKQTEANSFLEKKVKKKHAWTFN 170

Query: 548 DAVHTAILTLKEGFEGQMTADNIEVGI--CDASGFRKLEPAHV 670
           + V TAI  L            +EVG+   D   FRKL  A +
Sbjct: 171 ETVETAISCLSSVLSADFKPSELEVGVVSMDNPRFRKLTEAEI 213


>SB_40084| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 67

 Score = 60.9 bits (141), Expect = 9e-10
 Identities = 23/30 (76%), Positives = 28/30 (93%)
 Frame = +2

Query: 368 GVRPFGVSLLICGWENDRPYLFQCDPSGAY 457
           GVRPFGVSLL+ GW++DRPYLFQCDPS ++
Sbjct: 2   GVRPFGVSLLVAGWDDDRPYLFQCDPSESF 31



 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 20/31 (64%), Positives = 25/31 (80%)
 Frame = +2

Query: 581 EGFEGQMTADNIEVGICDASGFRKLEPAHVK 673
           E FEGQMT DNIE+G+C+ +GFR+L P  VK
Sbjct: 29  ESFEGQMTEDNIELGVCNENGFRRLTPPEVK 59


>SB_40821| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 172

 Score = 41.1 bits (92), Expect = 8e-04
 Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
 Frame = +2

Query: 422 PYLFQCDPSGAYFAWKATAMGKNFNNGKTFLEKRYTE---DLELDDAVHTAILTLKEGF- 589
           P++FQ  PS  YF  KA A+G    + +T+LEK Y +   D E ++ +   +  L+E   
Sbjct: 4   PHIFQTCPSANYFDCKAMAIGARSQSARTYLEK-YLDAFGDCEPEELIKHGLKALRETLP 62

Query: 590 -EGQMTADNIEVGI 628
            E ++T  N  +G+
Sbjct: 63  NEQELTTKNCSIGL 76


>SB_46004| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 78

 Score = 35.5 bits (78), Expect = 0.040
 Identities = 19/50 (38%), Positives = 26/50 (52%)
 Frame = +2

Query: 236 DYRLLVTQARKMAQQYYLMYHEPIPTAQLVQRVATVMQEYTQSGGVRPFG 385
           D R  V +AR  A  +   +   IP   L +RVA + Q YTQ+  +RP G
Sbjct: 27  DSRSQVQRARYEAANWKYKFGYEIPVDMLCKRVADISQVYTQNAEMRPLG 76


>SB_40390| Best HMM Match : BON (HMM E-Value=0.68)
          Length = 561

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 19/48 (39%), Positives = 25/48 (52%)
 Frame = +1

Query: 328 ASGDRHARIYSIRRRPSFRRFVTDLRLGERSPLLIPVRSVGRVLRLEG 471
           A G   + + S +RR SF  + TD   G+ SPL     S  R+LRL G
Sbjct: 194 AIGHESSSVMSSKRRRSFLDYDTDPTSGQTSPL--SPSSASRILRLPG 239


>SB_19824| Best HMM Match : zf-C2H2 (HMM E-Value=1.4e-26)
          Length = 550

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +3

Query: 219 TPAWALIIVCSSHKPGKWPNSTT 287
           TP   +I+   + +PGKWPN+TT
Sbjct: 260 TPQGQIILTQETLEPGKWPNNTT 282


>SB_10931| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 467

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/61 (19%), Positives = 27/61 (44%)
 Frame = +2

Query: 395 LICGWENDRPYLFQCDPSGAYFAWKATAMGKNFNNGKTFLEKRYTEDLELDDAVHTAILT 574
           +ICGW+   P L+  D  G   + +  ++G         ++  Y  D+  ++A    + +
Sbjct: 154 MICGWDKKGPGLYYVDSDGTRLSNQMFSVGSGSTYAYGVMDSGYKYDMSPEEAYDLGVRS 213

Query: 575 L 577
           +
Sbjct: 214 I 214


>SB_22569| Best HMM Match : NAF (HMM E-Value=6.2)
          Length = 307

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = +1

Query: 244 SARHTSQENGPTVLPDVPRADTHSAV 321
           +++HT+QENG   LPD+   +T+ AV
Sbjct: 108 NSKHTAQENGLLNLPDITLRNTNLAV 133


>SB_30707| Best HMM Match : ARID (HMM E-Value=4e-35)
          Length = 1338

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = +2

Query: 467  KATAMGKNFNNGKTFLEKRYTEDLELDDAVHTAILTLKEGFEGQMTADNIE 619
            +A   G  F+  KT       +DLE  DA+H  +L  + G E + + D +E
Sbjct: 1178 QADPTGLEFHTEKTDENLLKEDDLETKDALHKDVLNEERGIEKENSFDWLE 1228


>SB_50741| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 545

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 23/86 (26%), Positives = 35/86 (40%)
 Frame = +2

Query: 401 CGWENDRPYLFQCDPSGAYFAWKATAMGKNFNNGKTFLEKRYTEDLELDDAVHTAILTLK 580
           C W    P +    P  A+ AW  +A       G   L KR        D  +T  L  +
Sbjct: 459 CCWPTATPSI----PDPAFDAWTDSAAEGTPITGIVALRKRKPSG-SCADTFNTIALQTR 513

Query: 581 EGFEGQMTADNIEVGICDASGFRKLE 658
           EG E Q+   +++ G CD    R+++
Sbjct: 514 EGTERQVKTCSLKDGRCDTRVKREVK 539


>SB_166| Best HMM Match : Myb_DNA-binding (HMM E-Value=6.7)
          Length = 380

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = +2

Query: 29  FSPSGKLVQIEYALAAVAAGGTSVGIKASNGVVIATENKHKSILYDEHSVNKV 187
           +  +GKLV  E+ +   A   TSV     +   ++T       LY +H VNKV
Sbjct: 210 YGTTGKLVNDEFRVMR-ALNATSVATSLLSNTNVSTPLNGTFFLYRDHLVNKV 261


>SB_58926| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2371

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 21/77 (27%), Positives = 32/77 (41%)
 Frame = +1

Query: 190  NDYWPYRNGVLRHGP*LSSARHTSQENGPTVLPDVPRADTHSAVGPASGDRHARIYSIRR 369
            ND++    G L  G    SA  +  E     L  V R    +  G  +GD+  ++YS+ +
Sbjct: 2070 NDFYSASAGRLYDGSSWCSATSSQAEYLQVDLGRVTRVTGIATQGSPTGDKWVKLYSVEQ 2129

Query: 370  RPSFRRFVTDLRLGERS 420
                  F T+   GE S
Sbjct: 2130 SDD-GHFFTEYTAGESS 2145


>SB_28550| Best HMM Match : Fer2_2 (HMM E-Value=2.49992e-42)
          Length = 1644

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +2

Query: 158 LYDEHSVNKVEMITGHIGM-VYSGMGP 235
           L +EHS NKV+M+ G+ G  +Y   GP
Sbjct: 367 LLEEHSNNKVKMVGGNTGKGIYKKDGP 393


>SB_15475| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 417

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = +1

Query: 49  SSNRICFSGCSSRRHFRWHKSVQWCCD 129
           +SN    SG  S R  R H S  WC D
Sbjct: 41  NSNITASSGSGSAREARLHNSAAWCSD 67


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,086,826
Number of Sequences: 59808
Number of extensions: 495863
Number of successful extensions: 1264
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1261
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)