Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_P07
         (593 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22964| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.2  
SB_8875| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.6  
SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23)             29   2.8  
SB_30941| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_44778| Best HMM Match : TPR_2 (HMM E-Value=0.00023)                 28   4.9  
SB_12036| Best HMM Match : G_glu_transpept (HMM E-Value=0)             28   6.5  
SB_18870| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  

>SB_22964| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1506

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
 Frame = +1

Query: 112 FGDKVTAAGKVNLFH---NDNHDITAKAFATRNMPDIANVPNFNTV 240
           FGDK   A  +  FH   ND  D +  +  TR + D++ +P + TV
Sbjct: 587 FGDKWIGANTIRAFHHTDNDGIDASENSNLTRIIFDLSTLPMYETV 632


>SB_8875| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 189

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +3

Query: 72  RPRSKSHGYTHPRVRRQGDSC 134
           RP S+SHG  HPRV    D+C
Sbjct: 92  RPTSQSHGNRHPRVPIDKDNC 112


>SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23)
          Length = 1026

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +3

Query: 75  PRSKSHGYTHPRVRRQGDSC 134
           P + SH YTH  VR  GD+C
Sbjct: 260 PHALSHNYTHLAVRYYGDAC 279


>SB_30941| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 330

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +3

Query: 75  PRSKSHGYTHPRVRRQGDSC 134
           P + SH YTH  VR  GD+C
Sbjct: 260 PHALSHNYTHLAVRYYGDAC 279


>SB_44778| Best HMM Match : TPR_2 (HMM E-Value=0.00023)
          Length = 1016

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 22/83 (26%), Positives = 42/83 (50%)
 Frame = -3

Query: 360 TLEEVQLSVQGVIVTIDEVRVSGGR*CTNLIFEHIVYSATDSVEVGYISDIWHISGGESL 181
           T ++V L+ + V +T D+V ++      +L  +    + TD V +   +D++  S G  L
Sbjct: 458 TGDDVHLTSEHVHLTSDDVHLTSDD--VHLTSDD--GNLTDDVHLTS-NDVYLTSDGVHL 512

Query: 180 RCDVVVIVVEEIHFAGSCHLVSE 112
             D V +  +++H  G  HL S+
Sbjct: 513 TSDDVHLTGDDVHLTGDVHLTSD 535


>SB_12036| Best HMM Match : G_glu_transpept (HMM E-Value=0)
          Length = 646

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/47 (29%), Positives = 28/47 (59%)
 Frame = +1

Query: 22  RQKLGAATAGVALDNVNGHGVSLTDTHIPGFGDKVTAAGKVNLFHND 162
           R  + + T  +++ + +G+GVSLT +    FG K+ +  K+ + +ND
Sbjct: 443 RTDVTSGTTHLSVVDADGNGVSLTSSINKYFGSKIRSK-KLGIIYND 488


>SB_18870| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1352

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/43 (32%), Positives = 26/43 (60%)
 Frame = -1

Query: 464 KYLESENPKLGSQEDFMKGVSNFLKPALKSTEVSGLLKRFSFP 336
           KY++S++  +   +D ++ V++F+K      E   LL+RF FP
Sbjct: 46  KYVQSKHIHVYPCDD-LRWVASFMKDGKTFEEAIALLRRFHFP 87


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,470,291
Number of Sequences: 59808
Number of extensions: 366865
Number of successful extensions: 1064
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1059
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1427401750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)