Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_P07
         (593 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g25690.1 68415.m03079 senescence-associated protein-related s...    32   0.33 
At5g19660.1 68418.m02339 subtilase family protein contains Pfam ...    28   4.1  
At2g23300.1 68415.m02781 leucine-rich repeat transmembrane prote...    28   4.1  
At2g26890.1 68415.m03226 DNAJ heat shock N-terminal domain-conta...    28   5.4  
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa...    27   7.1  
At1g71320.1 68414.m08232 S locus F-box-related / SLF-related con...    27   7.1  
At1g59910.1 68414.m06749 formin homology 2 domain-containing pro...    27   7.1  
At5g65160.1 68418.m08195 tetratricopeptide repeat (TPR)-containi...    27   9.4  
At5g22750.1 68418.m02657 SNF2 domain-containing protein / helica...    27   9.4  
At1g59820.1 68414.m06735 haloacid dehalogenase-like hydrolase fa...    27   9.4  

>At2g25690.1 68415.m03079 senescence-associated protein-related
           similar to senescence-associated protein SAG102
           (GI:22331931) [Arabidopsis thaliana]
          Length = 324

 Score = 31.9 bits (69), Expect = 0.33
 Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
 Frame = +1

Query: 76  HGVSLTDTHIPGFGDKVTAAGKVNLFHN-DNHDITAKAFATRNMPDIANVPNFNTVGGGI 252
           HG +   THI  +GD+V    K  L  + DN +     F + N   I N  N   +GGG 
Sbjct: 226 HGPNPKTTHI--YGDRVLECHKNELKGDEDNKEKFGSVFPSDNFLGICNFCN-KKLGGGD 282

Query: 253 D-YMFKDK 273
           D YM+++K
Sbjct: 283 DIYMYREK 290


>At5g19660.1 68418.m02339 subtilase family protein contains Pfam
           profile: PF00082 subtilase family
          Length = 1038

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 20/63 (31%), Positives = 29/63 (46%)
 Frame = +1

Query: 238 VGGGIDYMFKDKIGASATAAHTDFINRNDYSLDGKLNLFKSPDTSVDFNAGFKKFDTPFM 417
           V GG +    + + AS   A  D I   D+S+DG+ + + S    V F AG      P +
Sbjct: 745 VTGGANIPALNNLLASFGIAFGDKILNGDFSIDGEQSRYASGTNIVRFPAGGFLHTFPLL 804

Query: 418 KSS 426
            SS
Sbjct: 805 DSS 807


>At2g23300.1 68415.m02781 leucine-rich repeat transmembrane protein
           kinase, putative 
          Length = 773

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = -1

Query: 131 AVTLSPNPGMCVSVRLTPWPFTLSSAT--PAVAAPSFCLLVKS 9
           +++ S NPG+C      P P   S AT  P  + P+   + KS
Sbjct: 268 SISFSGNPGLCGGPTRNPCPIPSSPATVSPPTSTPALAAIPKS 310


>At2g26890.1 68415.m03226 DNAJ heat shock N-terminal domain-containing
            protein contains Pfam profile PF00226: DnaJ domain
          Length = 2554

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -1

Query: 140  LPAAVTLSPNPGMCVSVRLTPWPFTLSSATPAVAAPSFCLLVKSK 6
            L A+  LS   G+C    LTP+  T +    A+  P    L+K +
Sbjct: 1804 LQASQALSRLTGLCADESLTPYNATAADVLKALLTPKLASLLKDE 1848


>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
           domain-containing protein / RNA recognition motif
           (RRM)-containing protein KIAA0122 gene , Homo sapiens,
           EMBL:HSDKG02; contains Pfam profiles  PF00076: RNA
           recognition motif. (a.k.a. RRM, RBD, or RNP domain),
           PF01585: G-patch domain, weak hit to PF00641: Zn-finger
           in Ran binding protein and others
          Length = 1105

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +3

Query: 69  KRPRSKSHGYTHPRVRRQGDSCRQSESLPQR*PRHHSEGF 188
           + PR +SHG ++     +GD   +SE   +   RH+ + F
Sbjct: 253 RSPRGRSHGRSYREDSYEGDHWNESERRREYEDRHNQDHF 292


>At1g71320.1 68414.m08232 S locus F-box-related / SLF-related
           contains F-box domain Pfam:PF00646; contains TIGRFAM
           TIGR01640: F-box protein interaction domain; similar to
           S locus F-box (SLF)-S2-like protein (GI:13161528)
           [Antirrhinum hispanicum]
          Length = 392

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -1

Query: 104 MCVSVRLTPWPFTLSSATPAVA 39
           M +S     WPFTLS  TPA+A
Sbjct: 144 MKLSPEFMQWPFTLSYLTPAMA 165


>At1g59910.1 68414.m06749 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02128
          Length = 929

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -1

Query: 143 TLPAAVTLSPNPGMCVSVRLTPWPFTLSSATPAVAAPS 30
           +LP    +  N  +  S  LTP  FT ++A PA   P+
Sbjct: 342 SLPPGQYMPGNAALSASTPLTPGQFTTANAPPAPPGPA 379


>At5g65160.1 68418.m08195 tetratricopeptide repeat (TPR)-containing
           protein contains Pfam profile PF00515 TPR Domain
          Length = 593

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +1

Query: 10  DLTNRQKLGAATAGVALDNVNGHGVSLT 93
           +L N  + G  TAGV   N NG+GV  T
Sbjct: 180 NLGNLNQTGPVTAGVNYGNNNGYGVKRT 207


>At5g22750.1 68418.m02657 SNF2 domain-containing protein / helicase
           domain-containing protein / RING finger
           domain-containing protein similar to SP|P36607 DNA
           repair protein rad8 {Schizosaccharomyces pombe};
           contains Pfam profiles PF00271: Helicase conserved
           C-terminal domain, PF00176: SNF2 family N-terminal
           domain, PF00097: Zinc finger, C3HC4 type (RING finger)
          Length = 1029

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 19/63 (30%), Positives = 29/63 (46%)
 Frame = -3

Query: 252 YSATDSVEVGYISDIWHISGGESLRCDVVVIVVEEIHFAGSCHLVSEPGDVCIRETYSVA 73
           +S  DS E+G I + W        RC + ++  ++I   GSC    E   +      SV+
Sbjct: 172 FSTKDSGEIGRIPNEW-------ARCLLPLVRDKKIRIEGSCKSAPEALSIMDTILLSVS 224

Query: 72  VYI 64
           VYI
Sbjct: 225 VYI 227


>At1g59820.1 68414.m06735 haloacid dehalogenase-like hydrolase
           family protein similar to Potential
           phospholipid-transporting ATPase (EC 3.6.3.1) from Mus
           musculus [SP|P70704], {Bos taurus} SP|Q29449; contains
           InterPro accession IPR005834: Haloacid dehalogenase-like
           hydrolase
          Length = 1213

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +1

Query: 190 ATRNMPDIANVPNFNTVGGGIDYMFKDKIG 279
           A  N P  A   N N   G ++Y+F DK G
Sbjct: 387 AETNTPASARTSNLNEELGQVEYIFSDKTG 416


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,163,706
Number of Sequences: 28952
Number of extensions: 257070
Number of successful extensions: 709
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1180950720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)