Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_P05
(640 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 29 0.57
SPBC32C12.02 |ste11|aff1, stex|transcription factor Ste11|Schizo... 29 0.57
SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 28 0.99
SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|c... 28 0.99
SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces pom... 28 1.3
SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces p... 27 1.7
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce... 26 4.0
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce... 26 5.3
SPCC1682.03c |mug174||meiotically upregulated gene Mug174|Schizo... 26 5.3
SPAC869.01 |||amidase |Schizosaccharomyces pombe|chr 1|||Manual 25 7.0
SPBC36B7.04 |||tRNA dihydrouridine synthase Dus1 |Schizosaccharo... 25 9.2
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc... 25 9.2
SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 9.2
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 29.1 bits (62), Expect = 0.57
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +1
Query: 469 NTQSSALSNGGTYSASDSQSSRYHSGYNGYSGQSSTNSGHTYDSSGRS 612
++ SS+ S+ + S+S S SS S + SST+S H+ SS S
Sbjct: 179 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSVPITSSTSSSHSSSSSSSS 226
>SPBC32C12.02 |ste11|aff1, stex|transcription factor
Ste11|Schizosaccharomyces pombe|chr 2|||Manual
Length = 468
Score = 29.1 bits (62), Expect = 0.57
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +1
Query: 466 YNTQSSALSNGGTYSASDSQSS-RYHSGYNGYSGQSSTNSGHTYDSSGRS 612
Y ++ LS +++ + S SGY S S TNSGHT +++ RS
Sbjct: 346 YGQETELLSTPYCHTSYPAMSRLNSSSGYTCVSSSSVTNSGHTENNTWRS 395
>SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 475
Score = 28.3 bits (60), Expect = 0.99
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +1
Query: 493 NGGTYSASDSQSSRYHSGYNGYSGQSSTN 579
N +Y SDSQ S +H G N GQ N
Sbjct: 264 NKHSYKKSDSQQSFHHKGRNTRKGQRHNN 292
Score = 26.2 bits (55), Expect = 4.0
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +1
Query: 463 GYNTQSSALSNGGTYSASDSQSSR-YHSGYNGYSGQSSTNSGHTYDSSGRSQGY 621
G T SSA ++ DS S +HS +G++ + H+Y S Q +
Sbjct: 224 GSQTVSSANGKEVPQTSEDSSSQAPHHSSSSGHAPSQQGGNKHSYKKSDSQQSF 277
>SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
3|||Manual
Length = 625
Score = 28.3 bits (60), Expect = 0.99
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = +1
Query: 478 SSALSNGGTYSASDSQSSRYHSGYNGYSGQSSTNSGHTYDSSGRSQGYTG 627
SSA S+ + S+S S+S S + SS+ S HT S+ +S +G
Sbjct: 525 SSATSSSKSSSSSSSRSGSSSSSSSRSGSTSSSGSSHTITSTSQSVHTSG 574
>SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 687
Score = 27.9 bits (59), Expect = 1.3
Identities = 13/61 (21%), Positives = 25/61 (40%)
Frame = -1
Query: 529 SFENHWRCKFRRYLMQTIVCYSLHEMIKKIGIASHQKKRLLGNCDLRGYSDHNYPTRKHL 350
+++ +W CK + L + Y ++ + + S K L L + D + KH
Sbjct: 592 AWQEYWHCKIHKLLPKEDASYEQKVVLLTLSLLSKNKHTSLARSLLLSHLDKGWTWNKHS 651
Query: 349 L 347
L
Sbjct: 652 L 652
>SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 301
Score = 27.5 bits (58), Expect = 1.7
Identities = 16/59 (27%), Positives = 26/59 (44%)
Frame = +1
Query: 463 GYNTQSSALSNGGTYSASDSQSSRYHSGYNGYSGQSSTNSGHTYDSSGRSQGYTGQVEN 639
G T S L + ASD++ +RY + +S S G YD S+ + + E+
Sbjct: 182 GKRTSRSTLDRKRFHDASDTERNRYGRSPSPHSRFSEKPRGERYDIRSYSRSHKERYED 240
>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 817
Score = 26.2 bits (55), Expect = 4.0
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -1
Query: 508 CKFRRYLMQTIVCYSLHEMIKKIGIASHQKKRL 410
CK+ + I +LHE +KK+ H K RL
Sbjct: 649 CKYSNIRKEIIARSNLHENLKKLLAIPHDKLRL 681
>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2310
Score = 25.8 bits (54), Expect = 5.3
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = -1
Query: 265 PFGVALNHPYCARVQNSLPYFPSEHHKSQIYFLHPRNFWN 146
P+ +AL A +Q + +E KS ++ L PRNFWN
Sbjct: 799 PYILALKESADALMQFGSYEYATELLKSCLFLL-PRNFWN 837
>SPCC1682.03c |mug174||meiotically upregulated gene
Mug174|Schizosaccharomyces pombe|chr 3|||Manual
Length = 626
Score = 25.8 bits (54), Expect = 5.3
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +1
Query: 469 NTQSSALSNGGTYSASDSQSSRYHSGYNGYSGQSSTNSGHTYDSS 603
N+ ++ S T S SDS SS S + S SST+ + D S
Sbjct: 250 NSLLTSQSKNSTPSESDSSSSESSSSVSDSSDLSSTSDSSSGDES 294
>SPAC869.01 |||amidase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 583
Score = 25.4 bits (53), Expect = 7.0
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +1
Query: 514 SDSQSSRYHSGYNGYSGQSSTNSGHTYDSSGRSQG 618
+D +S+ Y GY+ GQS T + G S G
Sbjct: 191 ADMRSNDYSEGYSARGGQSRCPFNLTVNPGGSSSG 225
>SPBC36B7.04 |||tRNA dihydrouridine synthase Dus1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 399
Score = 25.0 bits (52), Expect = 9.2
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -2
Query: 243 IHIVRAFKIPSHISPLSTIKARFTSFIR 160
++I+R FK+ S S LS IK +R
Sbjct: 267 LNIIREFKLESDYSSLSAIKGHLFKLMR 294
>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 503
Score = 25.0 bits (52), Expect = 9.2
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = +1
Query: 544 GYNGYSGQSSTNSGHTYDSSGRSQGYTGQV 633
G GY G T+ Y+ +GR +G G +
Sbjct: 297 GRRGYPGYMYTDLSTIYERAGRVEGRNGSI 326
>SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 419
Score = 25.0 bits (52), Expect = 9.2
Identities = 12/61 (19%), Positives = 24/61 (39%)
Frame = +1
Query: 388 LEGRNFQEGVXXXXXXXXXXXXXHAGYNTQSSALSNGGTYSASDSQSSRYHSGYNGYSGQ 567
L G N+++ N Q+++ + + Q+ +HS +NGYS
Sbjct: 222 LNGVNYKQNTTNNRVSSFQNSQYSTLNNFQNNSNQSPNSNDLQPLQAEAFHSAHNGYSSS 281
Query: 568 S 570
+
Sbjct: 282 T 282
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,421,916
Number of Sequences: 5004
Number of extensions: 44523
Number of successful extensions: 128
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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