Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_P05
(640 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g04800.1 68414.m00476 glycine-rich protein 35 0.052
At4g33930.1 68417.m04815 glycine-rich protein hyphally regulated... 34 0.069
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 34 0.092
At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein... 33 0.21
At4g34300.1 68417.m04875 glycine-rich protein similar to auxin r... 32 0.37
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 32 0.37
At1g70460.1 68414.m08107 protein kinase, putative contains Pfam ... 31 0.85
At2g39340.1 68415.m04829 SAC3/GANP family protein contains Pfam ... 28 4.5
At2g05520.1 68415.m00584 glycine-rich protein (GRP) identical to... 28 4.5
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 28 4.5
At4g32450.1 68417.m04619 pentatricopeptide (PPR) repeat-containi... 28 6.0
At3g62090.1 68416.m06976 basic helix-loop-helix (bHLH) protein, ... 27 7.9
At3g56150.1 68416.m06241 eukaryotic translation initiation facto... 27 7.9
>At1g04800.1 68414.m00476 glycine-rich protein
Length = 200
Score = 34.7 bits (76), Expect = 0.052
Identities = 23/79 (29%), Positives = 29/79 (36%)
Frame = +1
Query: 181 GFYGAQRGNMGGNFERAHNMDGLAQHQMGGLVKQVQGELGEGRKTRTGSVFTAANSKGVY 360
G G G +GG F G + GG K V G G+G G F KGV
Sbjct: 77 GSVGGFGGGIGGGFGGGGFGGGAGKGVDGGFGKGVDGGAGKGVDGGAGKGFDGGVGKGVD 136
Query: 361 GSGNYDLSNLEGRNFQEGV 417
G G+ F+ G+
Sbjct: 137 GGAGKGFDGGVGKGFEGGI 155
>At4g33930.1 68417.m04815 glycine-rich protein hyphally regulated
protein, Candida albicans, PIR2:S58135
Length = 343
Score = 34.3 bits (75), Expect = 0.069
Identities = 30/111 (27%), Positives = 46/111 (41%), Gaps = 2/111 (1%)
Frame = +1
Query: 298 GEGRKTRTGSV-FTAANSKGVYGSGNYDL-SNLEGRNFQEGVXXXXXXXXXXXXXHAGYN 471
G G+ G + + NS G GSG+ SN G ++ G +G N
Sbjct: 33 GSGQSGSNGGWGWRSGNSGGSSGSGSGGSDSNSGGSSWGWGWSSDGTDTNWGWGSSSGSN 92
Query: 472 TQSSALSNGGTYSASDSQSSRYHSGYNGYSGQSSTNSGHTYDSSGRSQGYT 624
S S +S+ + SS S +NG++ ST S H+ + R GY+
Sbjct: 93 HSSGTGSTHNGHSSGSNHSSATGSTHNGHT---STGSNHSSGNGSRHNGYS 140
Score = 29.5 bits (63), Expect = 2.0
Identities = 17/50 (34%), Positives = 22/50 (44%)
Frame = +1
Query: 457 HAGYNTQSSALSNGGTYSASDSQSSRYHSGYNGYSGQSSTNSGHTYDSSG 606
H G+ + S S+G + S HS G + SST S H SSG
Sbjct: 118 HNGHTSTGSNHSSGNGSRHNGYSSGSNHSSSTGSNHSSSTGSTHNNHSSG 167
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 33.9 bits (74), Expect = 0.092
Identities = 31/110 (28%), Positives = 37/110 (33%)
Frame = +1
Query: 298 GEGRKTRTGSVFTAANSKGVYGSGNYDLSNLEGRNFQEGVXXXXXXXXXXXXXHAGYNTQ 477
G G +G A G G Y N G G GY +
Sbjct: 146 GAGGYGGSGGYGGGAGGYGGNSGGGYG-GNAAGGYGGSGAGGYGGDATGHGGAGGGYGSS 204
Query: 478 SSALSNGGTYSASDSQSSRYHSGYNGYSGQSSTNSGHTYDSSGRSQGYTG 627
S+G TY S S+ YNG SG S N TY SS + G+ G
Sbjct: 205 GGFGSSGNTYGEGSSASAGAVGDYNGSSGYGSAN---TYGSS--NGGFAG 249
>At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 551
Score = 32.7 bits (71), Expect = 0.21
Identities = 18/44 (40%), Positives = 24/44 (54%)
Frame = +1
Query: 457 HAGYNTQSSALSNGGTYSASDSQSSRYHSGYNGYSGQSSTNSGH 588
H G+N +S ++GG Y SQSSR+HSG + Q S H
Sbjct: 473 HIGHNYRSPKFNSGGHYPG--SQSSRHHSGPSPSRWQPSHQHHH 514
>At4g34300.1 68417.m04875 glycine-rich protein similar to auxin
response factor 30 (GI:20145855) {Arabidopsis thaliana}
Length = 313
Score = 31.9 bits (69), Expect = 0.37
Identities = 30/107 (28%), Positives = 41/107 (38%), Gaps = 4/107 (3%)
Frame = +1
Query: 298 GEGRKTRTGSVFTAANSKGVYGSGNYDLSNLEGRNFQEGVXXXXXXXXXXXXXHAGYNTQ 477
G G+ G ++ GSG D SN G ++ G +G N
Sbjct: 32 GSGQSGSNGDWGWSSGGSFGSGSGGSD-SNSGGSSWGWGWSSDGTDTNWGWGSSSGSNHS 90
Query: 478 SSALSNGGTYSASDSQSSRYHSGYNGYSG----QSSTNSGHTYDSSG 606
S S +S+ + SS S +NG+S SST S H SSG
Sbjct: 91 SGTGSTHNGHSSGSNHSSGTGSTHNGHSSGSNHSSSTGSTHNNHSSG 137
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 31.9 bits (69), Expect = 0.37
Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Frame = +1
Query: 490 SNGGTYSASDSQSSRY----HSGYNGYSGQSSTNSGHTYDSSGRSQGYTG 627
S GG Y + S S R + GY G SG+S G S G S Y+G
Sbjct: 515 SGGGGYGSYGSSSGRSGGGSYGGYGGSSGRSGGGGGSYGGSGGSSSRYSG 564
Score = 30.3 bits (65), Expect = 1.1
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Frame = +1
Query: 463 GYNT--QSSALSNGGTYSASDSQSSRYHSGYNGYSGQSSTNSGHTYDSSGRSQGY 621
GY + SS S GG+Y S R G Y G ++S ++ S RS G+
Sbjct: 519 GYGSYGSSSGRSGGGSYGGYGGSSGRSGGGGGSYGGSGGSSSRYS-GGSDRSSGF 572
Score = 30.3 bits (65), Expect = 1.1
Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = +1
Query: 457 HAGYNTQSSALSNGG-TYSASDSQSSRYHSGYNGYSGQSSTNSG 585
+ GY S GG +Y S SSRY G + SG S SG
Sbjct: 535 YGGYGGSSGRSGGGGGSYGGSGGSSSRYSGGSDRSSGFGSFGSG 578
>At1g70460.1 68414.m08107 protein kinase, putative contains Pfam
PF00069: Protein kinase domain
Length = 710
Score = 30.7 bits (66), Expect = 0.85
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +1
Query: 481 SALSNGGTYSASDSQSSRYHSGYNGYSGQSSTNSGHTYDSSGRSQGYT 624
S S+G Y + ++ +SG GY+ Q +NSG+++ S GYT
Sbjct: 279 SIKSDGFLYGQNPTKG---YSGPGGYNSQQQSNSGNSFGSQRGGGGYT 323
>At2g39340.1 68415.m04829 SAC3/GANP family protein contains Pfam
profile: PF03399 SAC3/GANP family
Length = 1006
Score = 28.3 bits (60), Expect = 4.5
Identities = 11/39 (28%), Positives = 22/39 (56%)
Frame = +1
Query: 511 ASDSQSSRYHSGYNGYSGQSSTNSGHTYDSSGRSQGYTG 627
+S S ++ Y+GY+ +++ H Y ++G S Y+G
Sbjct: 90 SSTSGTANVAQDYSGYTPYQTSSDPHNYSNTGYSNYYSG 128
>At2g05520.1 68415.m00584 glycine-rich protein (GRP) identical to
glycine-rich protein; atGRP (GI:259447) [Arabidopsis
thaliana]
Length = 145
Score = 28.3 bits (60), Expect = 4.5
Identities = 15/58 (25%), Positives = 18/58 (31%)
Frame = +1
Query: 463 GYNTQSSALSNGGTYSASDSQSSRYHSGYNGYSGQSSTNSGHTYDSSGRSQGYTGQVE 636
GY +NGG Y Y G G G GR QG G+ +
Sbjct: 43 GYGDNGGNYNNGGGYQGGGGNYQGGGGNYQGGGGNYQGGGGRYQGGGGRYQGGGGRYQ 100
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 28.3 bits (60), Expect = 4.5
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +1
Query: 496 GGTYSASDSQSSRYHSGYNGYSGQSSTNSGHTYDSSGRSQGYTG 627
GG Y ASD GY G +G NS ++ ++G GY G
Sbjct: 125 GGGYGASDGGYGAPAGGYGGGAGGYGGNSSYS-GNAGGGGGYGG 167
>At4g32450.1 68417.m04619 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 537
Score = 27.9 bits (59), Expect = 6.0
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = +1
Query: 493 NGGTYSASDSQSSRYHSGYNGYSGQSSTNSGHTYDSSGRSQGY 621
NGG S Q + Y N SGQ+ TN + + R+Q Y
Sbjct: 58 NGGEQSLGGFQQNSYEQSLNPVSGQNPTNRFY-QNGYNRNQSY 99
>At3g62090.1 68416.m06976 basic helix-loop-helix (bHLH) protein,
putative very strong similarity to PIF3 like basic Helix
Loop Helix protein 2 (PIL2) [Arabidopsis thaliana]
GI:22535494
Length = 346
Score = 27.5 bits (58), Expect = 7.9
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -1
Query: 250 LNHPYCARVQNSLPYFPSEHHKSQ 179
LNHP +QNS P+ P+E+ Q
Sbjct: 287 LNHPGLMPMQNSAPFIPTENCSPQ 310
>At3g56150.1 68416.m06241 eukaryotic translation initiation factor 3
subunit 8 / eIF3 p110 / eIF3c / p105 (TIF3C1) nearly
identical to SP|O49160 Eukaryotic translation initiation
factor 3 subunit 8 (eIF3 p110) (eIF3c) (p105)
{Arabidopsis thaliana}
Length = 900
Score = 27.5 bits (58), Expect = 7.9
Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Frame = +1
Query: 478 SSALSNGGTYSASDSQSSRYHSGY-NGYSGQSSTNSGHTYDSSGRSQGYTGQV 633
+ A S GG Y + + G +GY G S+ + R GY G+V
Sbjct: 824 AGAASGGGGYWQDKANYGQGRQGNRSGYGGGRSSGQNGQWSGQNRGGGYAGRV 876
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,571,584
Number of Sequences: 28952
Number of extensions: 231667
Number of successful extensions: 731
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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