Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_P04
         (441 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|ch...    29   0.32 
SPAC2F3.02 |||ER protein translocation subcomplex subunit|Schizo...    29   0.42 
SPAC1071.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   1.3  
SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase |Schizosac...    25   5.2  
SPAC105.02c |||ankyrin repeat protein, unknown biological role|S...    25   6.8  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    24   9.0  
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    24   9.0  
SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual         24   9.0  

>SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 891

 Score = 29.1 bits (62), Expect = 0.32
 Identities = 21/56 (37%), Positives = 28/56 (50%)
 Frame = -2

Query: 227 R*RREPNSTASSSVISPWRHKFRRELFAISCAALYSLTNPDSLFSRIGSNNTSPSL 60
           R +  PNST+ SS  +P R  F  + F     + YSL +  S F    S+ TSP L
Sbjct: 695 RAKSTPNSTSFSSPPTPHRSPFSGQAFTGMGLSNYSLMSSSS-FPSAQSSPTSPFL 749


>SPAC2F3.02 |||ER protein translocation subcomplex
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 192

 Score = 28.7 bits (61), Expect = 0.42
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +1

Query: 10  ATLLDPTTNVDIGKNLIKDGLVLLDPIREKRLSGLVSEY 126
           A  L+    ++  K +++DGL+L +P+    L  L + Y
Sbjct: 150 AKALEAMHRIEEAKQVVRDGLILAEPVTRNELVALWASY 188


>SPAC1071.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 338

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = -3

Query: 220 GANRTRPRHLQLYHRGATSSGASSLLYPALLYIHLPIQTVSSPVS 86
           G +  + R+ Q+Y    T + + S L+ A+ Y+ L ++TVSS  S
Sbjct: 6   GNSSKKKRNTQIYRIFFTLTFSLSNLFLAICYLFLNVRTVSSDSS 50


>SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +3

Query: 318 HALCHVHRAPCGNNFIHSH 374
           H  C +   PCG N+ H H
Sbjct: 235 HPDCGLQLLPCGMNYFHPH 253


>SPAC105.02c |||ankyrin repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 170

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +2

Query: 83  TRYGRRDCLDW*VNI 127
           T+YG  +CLDW ++I
Sbjct: 55  TKYGSLECLDWLLDI 69


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2685

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = -2

Query: 137 CAALYSLTNPDSLFSRIGSNNTSPSLIRFFPMSTLV 30
           C A Y L   D   + I  N  +PS   FFP+   V
Sbjct: 324 CGATYILNGSDFGLNLILLNKKNPSHRMFFPVEACV 359


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
           E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 19/56 (33%), Positives = 26/56 (46%)
 Frame = +1

Query: 40  DIGKNLIKDGLVLLDPIREKRLSGLVSEYRAAQDIAKSSRLNLWRHGDITEDDAVE 207
           DI    +   L +L  IRE  L GLV     +  IA  S LN  +  +  + DA+E
Sbjct: 720 DIRSLAVTTALKMLCSIRENNLDGLVCSLPLSSFIA--SILNSRKSDNFLKRDALE 773


>SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 503

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +1

Query: 307 PSHIMHCATCTVPHAETILYTVIYE 381
           P H++HCA   +P   T L   ++E
Sbjct: 101 PDHVVHCAGSCIPGFFTELDPSVFE 125


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,662,672
Number of Sequences: 5004
Number of extensions: 27671
Number of successful extensions: 76
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)