Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_P04
         (441 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0039 - 19118632-19118820,19119018-19119395,19120151-191203...    38   0.004
04_04_1032 - 30259180-30260519,30260650-30260720,30261099-302621...    29   1.7  
04_03_0554 - 17075142-17075159,17075788-17076591,17076619-170767...    29   2.2  
10_08_0312 + 16676339-16676379,16676676-16676916                       28   3.8  
02_03_0279 + 17250347-17252098                                         27   5.1  
10_08_0858 - 21108283-21108387,21108820-21108889,21109490-211096...    27   8.8  
02_05_0763 + 31583449-31583747,31584095-31584230,31584544-315845...    27   8.8  
01_05_0601 + 23573488-23574250,23574300-23574406,23575325-235754...    27   8.8  

>02_04_0039 - 19118632-19118820,19119018-19119395,19120151-19120345,
            19120425-19120502,19120567-19120752,19120828-19121058,
            19121137-19121490,19121588-19121785,19121869-19122039,
            19122156-19122263,19122362-19122580,19122665-19122871,
            19122978-19123196,19123315-19123389,19123749-19123901
          Length = 986

 Score = 37.9 bits (84), Expect = 0.004
 Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
 Frame = +1

Query: 13   TLLDPTTNVDIGKNLIKDGLVLLDPIRE---KRLSGLVSEYRAAQDIAKSSRLNLWRHGD 183
            TL+D  T   I   ++++GL  L+  +    +     +      Q+ AK  RL +W++GD
Sbjct: 908  TLVDAETETSINATMLEEGLARLERSKRWDTRERKAALQNLEQFQEKAKKERLQIWQYGD 967

Query: 184  ITEDDAVEF-GSRR*RGR 234
            +  D+  +   +RR  GR
Sbjct: 968  VESDEEEQAPAARRTGGR 985


>04_04_1032 -
           30259180-30260519,30260650-30260720,30261099-30262118,
           30263886-30264121
          Length = 888

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 17/64 (26%), Positives = 32/64 (50%)
 Frame = -2

Query: 218 REPNSTASSSVISPWRHKFRRELFAISCAALYSLTNPDSLFSRIGSNNTSPSLIRFFPMS 39
           ++P+S ++   IS +  K R +     C+   +  + + L SRI  N+ SP  I  +  S
Sbjct: 377 KQPDSFSAEQKISEFAEKQRSDSCERECSETETEDDAELLQSRIFMNSKSPGQIYMYYFS 436

Query: 38  TLVV 27
            L++
Sbjct: 437 MLIL 440


>04_03_0554 - 17075142-17075159,17075788-17076591,17076619-17076719,
            17077095-17077751,17077827-17078768,17078837-17078896,
            17079131-17079763,17079886-17079942,17080177-17080702
          Length = 1265

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = +1

Query: 4    PSATLLDPTTNVDIGKNLIKDGLVLLDPIREKRLSGLVSEYRAAQD 141
            P   +L  TTN  + K +I++ ++ +DP      + L +E RAA D
Sbjct: 1211 PGVDMLHDTTN-GVPKEIIEESMIKVDPEDTALCNSLNTEQRAAYD 1255


>10_08_0312 + 16676339-16676379,16676676-16676916
          Length = 93

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -3

Query: 364 IKLFPHGARCTWH 326
           I +FP G RCTWH
Sbjct: 67  IVVFPKGTRCTWH 79


>02_03_0279 + 17250347-17252098
          Length = 583

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -3

Query: 235 NAPASGANRTRPRHLQLYHRGATSSGASSLLYPA 134
           ++PA G     P H + +HR   ++ A++L YPA
Sbjct: 26  HSPAGGGGAAVPLHPRRHHRSVANT-ATALFYPA 58


>10_08_0858 -
           21108283-21108387,21108820-21108889,21109490-21109646,
           21109930-21110062,21110409-21110583,21113353-21113453,
           21113620-21113706,21115871-21115931,21116114-21116178,
           21116534-21117631
          Length = 683

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -2

Query: 179 PWRHKFRRELFAISCAALYSLTNPDSLFSRIGSNNTS 69
           PWR  F    FA   A  ++ +  +SL S++GS + S
Sbjct: 337 PWRAAFAAAGFAPVQATTFAESQAESLLSKLGSASAS 373


>02_05_0763 +
           31583449-31583747,31584095-31584230,31584544-31584593,
           31585586-31585852,31586481-31586708,31586873-31587011,
           31587091-31587161,31587313-31587412,31588201-31588264,
           31588346-31588417,31588500-31588720
          Length = 548

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +2

Query: 320 CTVPRAPCPMRKQFYTQSFTNS 385
           CT P+ PCP    +++++ T+S
Sbjct: 204 CTNPKQPCPYNIDYFSENTTSS 225


>01_05_0601 +
           23573488-23574250,23574300-23574406,23575325-23575491,
           23575565-23575713,23575814-23576256
          Length = 542

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 19/45 (42%), Positives = 23/45 (51%)
 Frame = -2

Query: 194 SSVISPWRHKFRRELFAISCAALYSLTNPDSLFSRIGSNNTSPSL 60
           SS+ S  R    R L A+S A    LTN  SLFSR+ +    P L
Sbjct: 20  SSLESLLRDSTSRFLAAVSAAPDPDLTNFRSLFSRVLNTYPDPPL 64


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,606,901
Number of Sequences: 37544
Number of extensions: 202078
Number of successful extensions: 599
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 835800280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)