Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_P04
         (441 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23596| Best HMM Match : No HMM Matches (HMM E-Value=.)              77   6e-15
SB_15183| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_11349| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.9  
SB_41882| Best HMM Match : Amelogenin (HMM E-Value=2)                  27   6.9  
SB_31528| Best HMM Match : DDHD (HMM E-Value=2e-29)                    27   9.1  

>SB_23596| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 830

 Score = 77.0 bits (181), Expect = 6e-15
 Identities = 32/54 (59%), Positives = 44/54 (81%)
 Frame = +1

Query: 40  DIGKNLIKDGLVLLDPIREKRLSGLVSEYRAAQDIAKSSRLNLWRHGDITEDDA 201
           D+GK+L+ DG VL++  +EKRL  ++ EYR AQD A+++RLNLWR+GD TEDDA
Sbjct: 658 DVGKSLVADGFVLVEKRKEKRLQKMMEEYRKAQDTARTTRLNLWRYGDFTEDDA 711


>SB_15183| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1488

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
 Frame = +3

Query: 318 HALCHVHR--APCGNNFIHSHLRIPMNDHNLQYISYSVCVC 434
           HAL H H    PC  +   SHL  P + H  Q  S+ V  C
Sbjct: 800 HALSHAHFPVTPCDTHTFQSHLVTPCHTHTFQ--SHLVTPC 838


>SB_11349| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 335

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = +3

Query: 315 HHALCHVHRAPCGNNFIHSHLRIPMNDHNLQY 410
           HHA+     A C NNF  SHLR  M +    Y
Sbjct: 179 HHAVVKPV-ASCSNNFCSSHLRCKMREGGKAY 209


>SB_41882| Best HMM Match : Amelogenin (HMM E-Value=2)
          Length = 264

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +3

Query: 315 HHALCHVHRAPCGNNFIHSHLRIPMNDHNLQYISYSVCV 431
           H  L   H  P  NN +  H  IP+N H++  I +S+ V
Sbjct: 73  HDLLTMHHPIPVNNNHVTIHHPIPVNQHHVT-IHHSIPV 110


>SB_31528| Best HMM Match : DDHD (HMM E-Value=2e-29)
          Length = 1123

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -3

Query: 187 LYHRGATSSGASSLLYPALLYIHLPIQTVSSPVSGLIT 74
           LYH+G   +G   + YP L +    +  + SP+   +T
Sbjct: 350 LYHQGYAGTGQPYVKYPKLAFKPFALFALGSPIGMFMT 387


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,066,261
Number of Sequences: 59808
Number of extensions: 232016
Number of successful extensions: 516
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 516
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 859323430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)