Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_P04
         (441 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40029-11|AAA81130.1|  914|Caenorhabditis elegans Tudor staphylo...    63   1e-10
AC025723-8|AAK29942.1| 1273|Caenorhabditis elegans C.elegans hom...    28   2.6  
U64603-4|AAO61442.1|  410|Caenorhabditis elegans Serotonin/octop...    27   8.0  
U64603-3|AAM15552.1|  422|Caenorhabditis elegans Serotonin/octop...    27   8.0  
U64603-2|AAB04582.3|  435|Caenorhabditis elegans Serotonin/octop...    27   8.0  

>U40029-11|AAA81130.1|  914|Caenorhabditis elegans Tudor
            staphylococcal nuclease homologprotein 1 protein.
          Length = 914

 Score = 62.9 bits (146), Expect = 1e-10
 Identities = 27/54 (50%), Positives = 38/54 (70%)
 Frame = +1

Query: 37   VDIGKNLIKDGLVLLDPIREKRLSGLVSEYRAAQDIAKSSRLNLWRHGDITEDD 198
            VDIGK+LI +GL L D  RE RL  LV++Y   +++A+ SR N+W +GD T +D
Sbjct: 860  VDIGKSLIAEGLALADHRREPRLQTLVNDYNTTEEVARKSRKNIWEYGDFTGND 913


>AC025723-8|AAK29942.1| 1273|Caenorhabditis elegans C.elegans
           homeobox protein 44,isoform a protein.
          Length = 1273

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
 Frame = +1

Query: 1   PPSATLLDPTTNVDIGKNLI--KDGLVLLDPIREKRLSGLVSEYRAAQDIAKSSRLNLWR 174
           P + TLLD +  ++  +  +   D    ++P+ EK  S + S   ++Q  A S R + WR
Sbjct: 693 PKAETLLDTSDPMEFKEEPVIRYDVTPKVEPVIEKIKSPVESPC-SSQAGASSLRASRWR 751

Query: 175 HGDITED 195
           H DI+++
Sbjct: 752 HDDISKE 758


>U64603-4|AAO61442.1|  410|Caenorhabditis elegans
           Serotonin/octopamine receptor familyprotein 7, isoform c
           protein.
          Length = 410

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
 Frame = -2

Query: 209 NSTASSSVISPWRHKFR---RELFAISCAALYSLTNPDSLFSRIG 84
           NST +  +   +  +FR   RE+ A  CA L ++    S  SR G
Sbjct: 363 NSTLNPLIYCKYNKEFRIPFREMLACRCATLQTVMRQQSFTSRYG 407


>U64603-3|AAM15552.1|  422|Caenorhabditis elegans
           Serotonin/octopamine receptor familyprotein 7, isoform b
           protein.
          Length = 422

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
 Frame = -2

Query: 209 NSTASSSVISPWRHKFR---RELFAISCAALYSLTNPDSLFSRIG 84
           NST +  +   +  +FR   RE+ A  CA L ++    S  SR G
Sbjct: 363 NSTLNPLIYCKYNKEFRIPFREMLACRCATLQTVMRQQSFTSRYG 407


>U64603-2|AAB04582.3|  435|Caenorhabditis elegans
           Serotonin/octopamine receptor familyprotein 7, isoform a
           protein.
          Length = 435

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
 Frame = -2

Query: 209 NSTASSSVISPWRHKFR---RELFAISCAALYSLTNPDSLFSRIG 84
           NST +  +   +  +FR   RE+ A  CA L ++    S  SR G
Sbjct: 363 NSTLNPLIYCKYNKEFRIPFREMLACRCATLQTVMRQQSFTSRYG 407


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,334,295
Number of Sequences: 27780
Number of extensions: 158205
Number of successful extensions: 411
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 411
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 756625558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)