Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_P04
(441 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g61780.1 68418.m07753 tudor domain-containing protein / nucle... 33 0.11
At5g07350.1 68418.m00839 tudor domain-containing protein / nucle... 31 0.26
At1g28430.1 68414.m03495 cytochrome P450, putative similar to cy... 31 0.46
At2g36480.1 68415.m04477 zinc finger (C2H2-type) family protein ... 28 2.4
At5g05310.3 68418.m00572 expressed protein 28 3.2
At5g05310.2 68418.m00571 expressed protein 28 3.2
At5g05310.1 68418.m00570 expressed protein 28 3.2
At1g28700.1 68414.m03535 expressed protein similar to GI:2827651... 27 4.2
At2g02950.1 68415.m00242 phytochrome kinase substrate 1 (PKS1) i... 27 5.6
At2g03200.1 68415.m00273 aspartyl protease family protein contai... 27 7.4
At2g02970.1 68415.m00249 nucleoside phosphatase family protein /... 27 7.4
At1g52510.1 68414.m05928 hydrolase, alpha/beta fold family prote... 27 7.4
At5g59680.1 68418.m07482 leucine-rich repeat protein kinase, put... 26 9.8
At5g02880.1 68418.m00231 HECT-domain-containing protein / ubiqui... 26 9.8
At4g00900.1 68417.m00122 calcium-transporting ATPase 2, endoplas... 26 9.8
At3g29230.1 68416.m03667 pentatricopeptide (PPR) repeat-containi... 26 9.8
>At5g61780.1 68418.m07753 tudor domain-containing protein / nuclease
family protein contains Pfam domains PF00567: Tudor
domain and PF00565: Staphylococcal nuclease homologue
Length = 985
Score = 32.7 bits (71), Expect = 0.11
Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Frame = +1
Query: 13 TLLDPTTNVDIGKNLIKDGLVLLDPIRE---KRLSGLVSEYRAAQDIAKSSRLNLWRHGD 183
TL+ + + ++++G+ ++ R K + QD A+ SR +W +GD
Sbjct: 909 TLIAVDDEISVNAAMLQEGIARMEKRRRWEPKDKQAALDALEKFQDEARKSRTGIWEYGD 968
Query: 184 ITEDD 198
I DD
Sbjct: 969 IQSDD 973
>At5g07350.1 68418.m00839 tudor domain-containing protein / nuclease
family protein contains Pfam domains PF00567: Tudor
domain and PF00565: Staphylococcal nuclease homologue
Length = 991
Score = 31.5 bits (68), Expect = 0.26
Identities = 14/65 (21%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Frame = +1
Query: 13 TLLDPTTNVDIGKNLIKDGLVLLDPIRE---KRLSGLVSEYRAAQDIAKSSRLNLWRHGD 183
TL+ + + ++++G+ ++ ++ K + Q+ A+ SR+ +W++GD
Sbjct: 913 TLIAVDDEISVNAAMLQEGIARMEKRQKWGHKGKQAALDALEKFQEEARKSRIGIWQYGD 972
Query: 184 ITEDD 198
I DD
Sbjct: 973 IESDD 977
>At1g28430.1 68414.m03495 cytochrome P450, putative similar to
cytochrome P450 (CYP93A1) GI:1435059 from [Glycine max]
Length = 521
Score = 30.7 bits (66), Expect = 0.46
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +1
Query: 112 LVSEYRAAQDIAKSSRLNLWRHGDITEDDAVEFGS 216
LVS A DI K++ +N+ GD+ D+ + FGS
Sbjct: 87 LVSSASTAYDIFKTNDINVSYRGDVAIDECIVFGS 121
>At2g36480.1 68415.m04477 zinc finger (C2H2-type) family protein
weak similarity to S-locus protein 4 (GI:6069478)
[Brassica rapa]; weak similarity to Pre-mRNA cleavage
complex II protein Pcf11 (Fragment) (Swiss-Prot:O94913)
[Homo sapiens]; contains Prosite PS00028: Zinc finger,
C2H2 type, domain
Length = 828
Score = 28.3 bits (60), Expect = 2.4
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +1
Query: 73 VLLDPIREKRLSGLVSEYRAAQDIAKSSRLNLWRHGDITEDDAVE 207
+L +P+ EK + + EY A D+ +SR + G DD E
Sbjct: 170 LLSEPLYEKDIESIAGEYDYASDLPHNSRSVIKNVGSRITDDGCE 214
>At5g05310.3 68418.m00572 expressed protein
Length = 511
Score = 27.9 bits (59), Expect = 3.2
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -1
Query: 225 LAARTELDRVIFSYITVAPQVQARALCYILRCSIFTYQSRQSLLPYR 85
+AAR LD VI + +TV P + AL + C F + +LP R
Sbjct: 1 MAARIRLDAVISTIVTVHPH-ELPALLHSSSCFFFILSAYFVVLPLR 46
>At5g05310.2 68418.m00571 expressed protein
Length = 496
Score = 27.9 bits (59), Expect = 3.2
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -1
Query: 225 LAARTELDRVIFSYITVAPQVQARALCYILRCSIFTYQSRQSLLPYR 85
+AAR LD VI + +TV P + AL + C F + +LP R
Sbjct: 1 MAARIRLDAVISTIVTVHPH-ELPALLHSSSCFFFILSAYFVVLPLR 46
>At5g05310.1 68418.m00570 expressed protein
Length = 469
Score = 27.9 bits (59), Expect = 3.2
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -1
Query: 225 LAARTELDRVIFSYITVAPQVQARALCYILRCSIFTYQSRQSLLPYR 85
+AAR LD VI + +TV P + AL + C F + +LP R
Sbjct: 1 MAARIRLDAVISTIVTVHPH-ELPALLHSSSCFFFILSAYFVVLPLR 46
>At1g28700.1 68414.m03535 expressed protein similar to
GI:2827651,GP:10764853, GI:10764852, GI:7527728,
GI:4406788, GI:6063544 [Arabidopsis thaliana];
expression supported by MPSS
Length = 338
Score = 27.5 bits (58), Expect = 4.2
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -3
Query: 157 ASSLLYPALLYIHLPIQTVSSPVSGLI 77
A +LL+ LYI+ ++ S P+SGL+
Sbjct: 14 AVALLFAGALYIYFSSRSASDPISGLL 40
>At2g02950.1 68415.m00242 phytochrome kinase substrate 1 (PKS1)
identical to Swiss-Prot:Q9SWI1 phytochrome kinase
substrate 1 [Arabidopsis thaliana]
Length = 439
Score = 27.1 bits (57), Expect = 5.6
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = -2
Query: 149 FAISCAALYSLTNPDSLFSRIGSNNTSPSLIRFFPMST 36
F +SC + S+ L R N T PS + FPM T
Sbjct: 374 FLMSCKSHKSVMVSGDLDRRSSMNKTQPSYVPRFPMET 411
>At2g03200.1 68415.m00273 aspartyl protease family protein contains
Pfam domain, PF00026: eukaryotic aspartyl protease
Length = 461
Score = 26.6 bits (56), Expect = 7.4
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = -3
Query: 166 SSGASSLLYPALLYIHLPIQTVSSPVSGLITRARP 62
SS +SSLL+P L + + +VSS LI R P
Sbjct: 3 SSSSSSLLFPFFLILFSCLISVSSSRRSLIDRTLP 37
>At2g02970.1 68415.m00249 nucleoside phosphatase family protein /
GDA1/CD39 family protein low similarity to SP|P55772
Ectonucleoside triphosphate diphosphohydrolase 1 (EC
3.6.1.5) (Ecto-apyrase) {Mus musculus}; contains Pfam
profile PF01150: GDA1/CD39 (nucleoside phosphatase)
family
Length = 555
Score = 26.6 bits (56), Expect = 7.4
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = -2
Query: 218 REPNSTASSSVISPWRHKFRRELFAISCAALYSLTNPDS 102
R NS++S S + P + + R A S ++ Y+LT P+S
Sbjct: 9 RVKNSSSSKSDMDPIKFQIRSGNRAPSSSSTYTLTKPNS 47
>At1g52510.1 68414.m05928 hydrolase, alpha/beta fold family protein
low similarity to SP|P22643 Haloalkane dehalogenase (EC
3.8.1.5) {Xanthobacter autotrophicus}; contains Pfam
profile PF00561: hydrolase, alpha/beta fold family
Length = 380
Score = 26.6 bits (56), Expect = 7.4
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = -3
Query: 133 LLYIHLPIQTVSSPVSGLITRAR-P*LDSFLCQHWLL 26
L ++ P+ TVSSPV GL + R P F CQ+ +L
Sbjct: 226 LAILNSPL-TVSSPVPGLFKQLRIPLFGEFTCQNAIL 261
>At5g59680.1 68418.m07482 leucine-rich repeat protein kinase,
putative similar to light repressible receptor protein
kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
contains leucine rich repeat (LRR) domains,
Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 882
Score = 26.2 bits (55), Expect = 9.8
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -3
Query: 223 SGANRTRPRHLQLYHRGATSSGASSLLYPALLY 125
SG T+ L+LY+R S SSL YP +Y
Sbjct: 182 SGTYLTKSGSLKLYYREYFSKSDSSLRYPDDIY 214
>At5g02880.1 68418.m00231 HECT-domain-containing protein /
ubiquitin-transferase family protein /
armadillo/beta-catenin-like repeat-containing protein
similar to SP|Q14669 Thyroid receptor interacting
protein 12 (TRIP12) {Homo sapiens}; contains Pfam
profiles PF00632: HECT-domain (ubiquitin-transferase),
PF00514: Armadillo/beta-catenin-like repeat
Length = 1502
Score = 26.2 bits (55), Expect = 9.8
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = -2
Query: 416 RDILEVMIVHRNS*MTVYKIVSAWGTVHVAQCMMCEGEAV 297
RD+L VMI NS VY +H C+ G+ V
Sbjct: 441 RDMLPVMIQVLNSGANVYVSYGCLSAIHKLTCLSKSGDIV 480
>At4g00900.1 68417.m00122 calcium-transporting ATPase 2, endoplasmic
reticulum-type (ECA2) nearly identical to SP|O23087
Calcium-transporting ATPase 2, endoplasmic
reticulum-type (EC 3.6.3.8) {Arabidopsis thaliana};
contains InterPro Accession IPR006069: Cation
transporting ATPase
Length = 1054
Score = 26.2 bits (55), Expect = 9.8
Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +1
Query: 1 PPSATLLDPTTNVDIGKNLIKDGLV-LLDPIREK 99
P LLDP++ +I NLI G+V L DP RE+
Sbjct: 595 PSHKKLLDPSSYSNIETNLIFVGVVGLRDPPREE 628
>At3g29230.1 68416.m03667 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 600
Score = 26.2 bits (55), Expect = 9.8
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = +1
Query: 37 VDIGKNLIKDGLVLLDPIREKRLSGLVSEYRAAQD 141
VDI K ++ D LV LDP S L + Y AA+D
Sbjct: 500 VDIAKEVL-DNLVKLDPCDPGNYSLLSNIYAAAED 533
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,887,896
Number of Sequences: 28952
Number of extensions: 149630
Number of successful extensions: 438
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 438
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 702840360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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