Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_P03
         (478 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g60460.1 68418.m07583 sec61beta family protein similar to SP|...    38   0.003
At3g60540.2 68416.m06772 sec61beta family protein similar to SP|...    36   0.011
At3g60540.1 68416.m06771 sec61beta family protein similar to SP|...    36   0.011
At2g45070.1 68415.m05610 sec61beta family protein similar to SP|...    35   0.033
At3g24000.1 68416.m03014 pentatricopeptide (PPR) repeat-containi...    27   6.6  
At3g07570.1 68416.m00907 membrane protein, putative similar to m...    27   6.6  
At1g61490.1 68414.m06928 S-locus protein kinase, putative simila...    27   6.6  

>At5g60460.1 68418.m07583 sec61beta family protein similar to
           SP|P52870 Protein transport protein SEC61 beta 1 subunit
           {Saccharomyces cerevisiae}; contains Pfam profile
           PF03911: Sec61beta family
          Length = 109

 Score = 38.3 bits (85), Expect = 0.003
 Identities = 19/42 (45%), Positives = 22/42 (52%)
 Frame = +1

Query: 256 GSGGMWRFYTDDSXXXXXXXXXXXXMSLLFIASVFMLHIWGK 381
           GS  M RFYTDD+            MSL FI  V  LH++GK
Sbjct: 58  GSSNMLRFYTDDAPGLKISPTVVLIMSLCFIGFVTALHVFGK 99


>At3g60540.2 68416.m06772 sec61beta family protein similar to
           SP|P52870 Protein transport protein SEC61 beta 1 subunit
           {Saccharomyces cerevisiae}; contains Pfam profile
           PF03911: Sec61beta family
          Length = 81

 Score = 36.3 bits (80), Expect = 0.011
 Identities = 18/42 (42%), Positives = 24/42 (57%)
 Frame = +1

Query: 256 GSGGMWRFYTDDSXXXXXXXXXXXXMSLLFIASVFMLHIWGK 381
           G+G M +FYTDD+            MS+ FIA V +LH+ GK
Sbjct: 33  GAGTMLQFYTDDAPGLKISPNVVLIMSIGFIAFVAVLHVMGK 74


>At3g60540.1 68416.m06771 sec61beta family protein similar to
           SP|P52870 Protein transport protein SEC61 beta 1 subunit
           {Saccharomyces cerevisiae}; contains Pfam profile
           PF03911: Sec61beta family
          Length = 81

 Score = 36.3 bits (80), Expect = 0.011
 Identities = 18/42 (42%), Positives = 24/42 (57%)
 Frame = +1

Query: 256 GSGGMWRFYTDDSXXXXXXXXXXXXMSLLFIASVFMLHIWGK 381
           G+G M +FYTDD+            MS+ FIA V +LH+ GK
Sbjct: 33  GAGTMLQFYTDDAPGLKISPNVVLIMSIGFIAFVAVLHVMGK 74


>At2g45070.1 68415.m05610 sec61beta family protein similar to
           SP|P52870 Protein transport protein SEC61 beta 1 subunit
           {Saccharomyces cerevisiae}; contains Pfam profile
           PF03911: Sec61beta family
          Length = 82

 Score = 34.7 bits (76), Expect = 0.033
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = +1

Query: 259 SGGMWRFYTDDSXXXXXXXXXXXXMSLLFIASVFMLHIWGK 381
           +G M +FYTDD+            MS+ FIA V +LH+ GK
Sbjct: 37  AGSMLQFYTDDAPGLKISPNVVLIMSIGFIAFVAVLHVMGK 77


>At3g24000.1 68416.m03014 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 633

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = -2

Query: 477 TITTHSQMLHHTFHYFTIIQKNTVVP 400
           T  +HS +L   +HY+ +++K+ +VP
Sbjct: 371 TACSHSGLLDEGWHYYELMKKDGIVP 396


>At3g07570.1 68416.m00907 membrane protein, putative similar to
           membrane protein SDR2 (GI:1747306) [Mus musculus]
          Length = 369

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 327 QYWNWTHFNTRRIICIEA 274
           +YWNW H N  R++ I A
Sbjct: 309 KYWNWYHHNIGRLLIILA 326


>At1g61490.1 68414.m06928 S-locus protein kinase, putative similar
           to KI domain interacting kinase 1 [Zea mays]
           gi|2735017|gb|AAB93834; contains S-locus glycoprotein
           family domain, Pfam:PF00954
          Length = 804

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +2

Query: 332 CHFSLLHQCSCFTF 373
           CH S LH CSC  F
Sbjct: 368 CHQSCLHNCSCLAF 381


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,150,544
Number of Sequences: 28952
Number of extensions: 155111
Number of successful extensions: 357
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 357
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 821630280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)