Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_P02
(574 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1152 + 9170628-9171899 47 1e-05
01_06_0824 - 32243495-32244319,32244449-32244859 43 2e-04
04_04_0619 + 26652923-26653267,26653440-26654273 41 8e-04
11_02_0011 - 7337618-7338496,7338596-7338991 38 0.004
03_02_0834 - 11630288-11630500,11630531-11630623,11630844-116310... 37 0.010
11_02_0012 - 7346282-7347136,7347234-7347593 31 0.49
11_01_0771 + 6453130-6454488 31 0.65
04_03_0260 - 13580396-13582990 28 4.6
04_03_0256 - 13564070-13564456,13564543-13565299,13565734-135665... 28 4.6
05_04_0122 + 18198594-18202269,18202551-18202591,18203273-182032... 28 6.1
02_05_1302 + 35567585-35567848,35568303-35568368,35568475-355685... 28 6.1
>01_01_1152 + 9170628-9171899
Length = 423
Score = 46.8 bits (106), Expect = 1e-05
Identities = 37/136 (27%), Positives = 66/136 (48%), Gaps = 2/136 (1%)
Frame = +2
Query: 173 KSVILSAFSVMIPLAQLAIASTGESHDELLKAIDFPN-DNVTKAVFTDLNQKVRSIKGVD 349
++ I+S S LA +A + GE+ ELL + P+ + ++ T L ++R +
Sbjct: 59 RNFIVSPLSFHAALALVADGARGETQRELLGFLGSPSLAELHRSPTTRLVARLRHLPNTS 118
Query: 350 LKLANKVYIANGNELNDQFAVVSRDVFNSEVQNLNFGKN-EEAANIINTWVEDHTNKRIT 526
A V++ G L +FA + + + + +F E+A +N +V D T I
Sbjct: 119 F--ACGVWVDRGRALTPEFADAAASRYAAVAEPADFATQPEQARERVNAFVSDATEGLIR 176
Query: 527 HLVDPSSLDSSTQCVL 574
++ P+S+DSST VL
Sbjct: 177 DVLPPNSVDSSTVVVL 192
>01_06_0824 - 32243495-32244319,32244449-32244859
Length = 411
Score = 43.2 bits (97), Expect = 2e-04
Identities = 37/144 (25%), Positives = 63/144 (43%), Gaps = 9/144 (6%)
Frame = +2
Query: 170 DKSVILSAFSVMIPLAQLAIASTGESHDELLKAIDFPN--------DNVTKAVFTDLNQK 325
DK++ +S S+ LA L + GE+ D+++ + +V D +
Sbjct: 31 DKNLAVSPLSLHAALALLGAGARGETLDQIIAFLGPAGGPAHAALASHVALCSLADDSGP 90
Query: 326 VRSIKGVDLKLANKVYIANGNELNDQFAVVSRDVFNSEVQNLNF-GKNEEAANIINTWVE 502
G ++ AN V++ L +A V D + +E + ++F K EEA IN W E
Sbjct: 91 GDDRGGPKVRFANGVWVDAALRLKAAYARVVADKYRAEARPVSFRDKLEEARREINEWFE 150
Query: 503 DHTNKRITHLVDPSSLDSSTQCVL 574
T RI + ++D +T VL
Sbjct: 151 SATAGRIKDFLPKDAVDRATPAVL 174
>04_04_0619 + 26652923-26653267,26653440-26654273
Length = 392
Score = 40.7 bits (91), Expect = 8e-04
Identities = 30/132 (22%), Positives = 59/132 (44%), Gaps = 1/132 (0%)
Frame = +2
Query: 182 ILSAFSVMIPLAQLAIASTGESHDELLKAIDFPNDNVTKAVFTDLNQKVRSIKGVDLKLA 361
+ S + LA LA + GE+ +LL + + + A L ++R+ L A
Sbjct: 23 MFSPLGLRAGLALLATGTDGETLRQLLAFLGSQHIHQLNAASAGLLAEMRAWP--QLSFA 80
Query: 362 NKVYIANGNELNDQFAVVSRDVFNSEVQNLNFGKNEEAANI-INTWVEDHTNKRITHLVD 538
+++ L +F + + ++++F AA +N ++ TN R+ + +
Sbjct: 81 AGIFVDRSLRLRPEFQSTAAAAHGAFPRSVDFQNQANAAAAEVNRFISQATNGRLNNTIS 140
Query: 539 PSSLDSSTQCVL 574
P + SST+CVL
Sbjct: 141 PGTFGSSTKCVL 152
>11_02_0011 - 7337618-7338496,7338596-7338991
Length = 424
Score = 38.3 bits (85), Expect = 0.004
Identities = 36/141 (25%), Positives = 63/141 (44%), Gaps = 6/141 (4%)
Frame = +2
Query: 170 DKSVILSAFSVMIPLAQLAIASTGESHDELLK-----AIDFPNDNVTKAVFTDLNQKVRS 334
+K+++ S S+ LA +A + G + DELL ++D ++V +AV L + S
Sbjct: 30 NKNLVFSPASLYAALALVAAGARGTTLDELLALLGAASLDDLEESVRRAVEVGLADESAS 89
Query: 335 IKGVDLKLANKVYIANGNELNDQFAVVSRDVFNSEVQNLNFGKN-EEAANIINTWVEDHT 511
G + A V+ EL + + + + + NF + + + IN WV T
Sbjct: 90 -GGPRVSDACGVWHDETLELKPAYRAAAAGTYKAVTRAANFQRQPKRSRKKINKWVSKAT 148
Query: 512 NKRITHLVDPSSLDSSTQCVL 574
NK I ++ S+ T VL
Sbjct: 149 NKLIPEILPDGSVHVDTALVL 169
>03_02_0834 -
11630288-11630500,11630531-11630623,11630844-11631050,
11631301-11633089,11633817-11634145
Length = 876
Score = 37.1 bits (82), Expect = 0.010
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Frame = +2
Query: 242 ESHDELLKAIDFPNDNVTKAVFTDLNQKVRSI--KGVDLKLANKVYIANGNELNDQFAVV 415
+ HD LLK+ NDN+TK + NQ + + KG D K +KV N+Q +
Sbjct: 467 KEHDTLLKSSVELNDNLTKTA-EERNQILECLKEKGGDNKALHKVIARLQRISNEQEKTI 525
Query: 416 S--RDVFNSEVQNLNFGKNEEAANI 484
+ R FN+E++N + G +E + +
Sbjct: 526 TGLRQGFNAELENKSLGTSESISRM 550
>11_02_0012 - 7346282-7347136,7347234-7347593
Length = 404
Score = 31.5 bits (68), Expect = 0.49
Identities = 35/140 (25%), Positives = 63/140 (45%), Gaps = 3/140 (2%)
Frame = +2
Query: 164 NPDKSVILSAFSVMIPLAQLAIASTGESHDELLKAIDFPNDNVTKAVFTDLNQKVRSIKG 343
N +++V+ S S+ LA +A + G + DEL+ + A DL + VR +
Sbjct: 28 NSNRNVVFSPVSLYAALALVASGARGTTLDELVALLG-------AASLDDLEESVR--RA 78
Query: 344 VDLKLANKVYIANGNELNDQFAVV--SRDVFNSEVQNLNFGKNEEAANI-INTWVEDHTN 514
V++ LA++ + G ++ V R + +F + +++ IN WV TN
Sbjct: 79 VEVGLADESE-SGGPRVSYACGVWHDERLALKPAYRAADFQRQPKSSRKKINKWVSKATN 137
Query: 515 KRITHLVDPSSLDSSTQCVL 574
K I ++ S+ T VL
Sbjct: 138 KLIREILPDGSVHGGTALVL 157
>11_01_0771 + 6453130-6454488
Length = 452
Score = 31.1 bits (67), Expect = 0.65
Identities = 16/38 (42%), Positives = 19/38 (50%)
Frame = +2
Query: 461 KNEEAANIINTWVEDHTNKRITHLVDPSSLDSSTQCVL 574
K EEA IN W T K IT ++ P S+ T VL
Sbjct: 169 KAEEARKQINAWARRATGKLITDVLPPRSVGPETAVVL 206
>04_03_0260 - 13580396-13582990
Length = 864
Score = 28.3 bits (60), Expect = 4.6
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = +2
Query: 404 FAVVSRDVFNSEVQNLNFGKNEEAANIINTWVEDHTNKRITHLVDPSSLD 553
F VV ++ + +N++ + EEA +IN E N ++ ++D S D
Sbjct: 737 FGVVLMEIISGR-KNIDISQPEEAVQLINLLREKAQNNQLIDMIDKHSSD 785
>04_03_0256 -
13564070-13564456,13564543-13565299,13565734-13566535,
13566884-13566917
Length = 659
Score = 28.3 bits (60), Expect = 4.6
Identities = 14/51 (27%), Positives = 27/51 (52%)
Frame = +2
Query: 401 QFAVVSRDVFNSEVQNLNFGKNEEAANIINTWVEDHTNKRITHLVDPSSLD 553
+F VV ++ + +N++ + EEA +IN E N ++ ++D S D
Sbjct: 531 KFGVVLMEIISGR-KNIDISQPEEAVQLINLLREKAQNSQLIDMIDKHSND 580
>05_04_0122 + 18198594-18202269,18202551-18202591,18203273-18203281,
18203336-18203551,18204257-18204361,18204761-18204919
Length = 1401
Score = 27.9 bits (59), Expect = 6.1
Identities = 20/46 (43%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = -2
Query: 489 LIMLAASSF--LPKFKFCTSELNTSLDTTAN*SFNSLPLAMYTLLA 358
L++L SF LP C S L SL+ T+N S SLP M L A
Sbjct: 1121 LVILGCPSFSSLPASIRCLSNLK-SLELTSNNSLTSLPEGMQNLTA 1165
>02_05_1302 +
35567585-35567848,35568303-35568368,35568475-35568573,
35569028-35569061,35569147-35569246,35569738-35569813,
35569974-35570315,35570426-35570569,35570840-35571073,
35571149-35571212,35571297-35571340,35571431-35571601
Length = 545
Score = 27.9 bits (59), Expect = 6.1
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = -2
Query: 120 FPFLSTLCGSMSLANVKAA-RANMVIIIFMLSVTFVF 13
FPFL T + +N+KAA +V ++F +SVT F
Sbjct: 190 FPFLMTRACCEACSNLKAAFLVAVVFLLFCMSVTLYF 226
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,602,544
Number of Sequences: 37544
Number of extensions: 240079
Number of successful extensions: 632
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 631
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -