Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_P01
         (399 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12441| Best HMM Match : Ribosomal_L18p (HMM E-Value=0)              81   4e-16
SB_35225| Best HMM Match : Ribosomal_L18p (HMM E-Value=4e-30)          79   1e-15
SB_25925| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.8  
SB_11523| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.8  
SB_24452| Best HMM Match : PKD_channel (HMM E-Value=0)                 28   3.2  
SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   3.2  
SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.2  
SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048)                    28   3.2  
SB_42238| Best HMM Match : Trypsin (HMM E-Value=0)                     27   4.3  
SB_25649| Best HMM Match : Trypsin (HMM E-Value=0)                     27   4.3  
SB_17985| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.6  
SB_50009| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.4  
SB_21661| Best HMM Match : EGF_CA (HMM E-Value=0)                      26   9.8  
SB_35310| Best HMM Match : Cadherin (HMM E-Value=5.9e-23)              26   9.8  
SB_30749| Best HMM Match : FARP (HMM E-Value=0.032)                    26   9.8  
SB_14693| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.8  
SB_3427| Best HMM Match : Homeobox (HMM E-Value=4e-24)                 26   9.8  

>SB_12441| Best HMM Match : Ribosomal_L18p (HMM E-Value=0)
          Length = 328

 Score = 80.6 bits (190), Expect = 4e-16
 Identities = 32/42 (76%), Positives = 38/42 (90%)
 Frame = +2

Query: 104 RRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQ 229
           RR +GKTDYYARKRL+ QDKNKYNTPKYR +VR++NKD+ CQ
Sbjct: 17  RRSQGKTDYYARKRLITQDKNKYNTPKYRFVVRITNKDIICQ 58


>SB_35225| Best HMM Match : Ribosomal_L18p (HMM E-Value=4e-30)
          Length = 113

 Score = 79.0 bits (186), Expect = 1e-15
 Identities = 31/39 (79%), Positives = 38/39 (97%)
 Frame = +2

Query: 230 VAYSRIEGDHIVCAAYSHELPRYGIKVGLTNYAAAYCTG 346
           +AY+++EGD I+CAAY+HELPRYG+KVGLTNYAAAYCTG
Sbjct: 1   IAYAKLEGDVIICAAYAHELPRYGVKVGLTNYAAAYCTG 39


>SB_25925| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 415

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
 Frame = +3

Query: 159 IKTNTTLQSTD*LYGYPIKMLPV-KLHTHALRVITLSVLPTLMNSHAMVSRWV*LTMLLP 335
           IK NT  ++T  L  + ++  PV K H    R + L    TL+N+   V+ W+   +LL 
Sbjct: 333 IKGNTISENT--LSTFRVRNTPVSKQHDDINRALFLE--STLLNTFQNVALWLQKFLLLK 388

Query: 336 TALVC 350
            A+VC
Sbjct: 389 PAMVC 393


>SB_11523| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 411

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +2

Query: 191 LIVRLSNKDVTCQVAYSRIEGD-HIVC 268
           L++ LS +D+TC V YS   G+ H +C
Sbjct: 108 LLLYLSKRDITCPVPYSSRNGELHTMC 134


>SB_24452| Best HMM Match : PKD_channel (HMM E-Value=0)
          Length = 1433

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = -3

Query: 367 QSSCQQQTSAVGSSIVSQTHLD--TIAWEFMRVGSTDNVITLNA*VCNLTGNIFI 209
           Q  C   T+  GS IV+   +D   +  E  R+G + NV  L   V  LTG + I
Sbjct: 378 QCLCDHLTAFGGSMIVAPNPIDFNKVFLEMSRLGESGNVAVLATIVSILTGYLVI 432


>SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2735

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +2

Query: 59  VKNKQYFKRYQVKFKRRREGKTDYYARKRLVV 154
           VK+K+  KR   K KR+ + K+D + RK+ ++
Sbjct: 228 VKHKRKQKRKSAKHKRKHKRKSDKHKRKQTLI 259


>SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3160

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +2

Query: 239 SRIEGDHIVCAAYSH-ELPRYGIKVGLTNYAAAY 337
           ++  GDH+  A+YSH ++ R+ + + L    AAY
Sbjct: 133 AKYRGDHLDIASYSHQQIDRFAVLLDLWTNEAAY 166


>SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048)
          Length = 1952

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +2

Query: 44   GFVKVVKNKQYFKRYQVKFKRRREGKTDY 130
            GF++ +K +    RY VK  R R    DY
Sbjct: 1090 GFIEALKRRDVSSRYNVKHARFRRATNDY 1118


>SB_42238| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 657

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 197 VRLSNKDVTCQVAYSRIEGDHIVCAAY 277
           VRL ++D TC  +YS I  +  +CA Y
Sbjct: 405 VRLVSRD-TCNASYSGIINERYICAGY 430


>SB_25649| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 718

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 197 VRLSNKDVTCQVAYSRIEGDHIVCAAY 277
           VRL ++D TC  +YS I  +  +CA Y
Sbjct: 690 VRLVSRD-TCNASYSGIINERYICAGY 715


>SB_17985| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 818

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 15/71 (21%), Positives = 37/71 (52%)
 Frame = +2

Query: 53  KVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQV 232
           K +K+ Q+     V+F+  +E + D + R + ++QD N   T +  ++++  N+    ++
Sbjct: 400 KTMKSMQFKNEELVRFQYNQEDQVDDFKRLKKLIQD-NGLPTIEQVIVLQRQNESYREEL 458

Query: 233 AYSRIEGDHIV 265
              R E + ++
Sbjct: 459 MNERKEKERLL 469


>SB_50009| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 149

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 6/82 (7%)
 Frame = +2

Query: 38  KMGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQD-KNKYNTP--KYRLIVR-- 202
           ++ F K  K   Y +  Q + + R EGK+  +  +R+  +   N  N P  K  + V   
Sbjct: 40  RVTFGKHFKGSLYIESTQRQKEERTEGKSAKHKDERVGKRCILNGLNVPQCKNSIYVNYE 99

Query: 203 -LSNKDVTCQVAYSRIEGDHIV 265
            LS K++TC   +   +GD ++
Sbjct: 100 LLSQKEITCPYTFPEGDGDILI 121


>SB_21661| Best HMM Match : EGF_CA (HMM E-Value=0)
          Length = 1202

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = +2

Query: 221 TCQVAYSRIEGDHIVCAAY 277
           TC V YS   GD +VCAAY
Sbjct: 617 TCHVGYS---GDGVVCAAY 632


>SB_35310| Best HMM Match : Cadherin (HMM E-Value=5.9e-23)
          Length = 1250

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 398 CRDCPSRASATIFLPATDQCS 336
           CR CP+   +  F+P   QCS
Sbjct: 106 CRICPNNTYSDQFMPVCQQCS 126


>SB_30749| Best HMM Match : FARP (HMM E-Value=0.032)
          Length = 2565

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +2

Query: 80  KRYQVKFKRRREGKTDYYARKRL-VVQDKNKY 172
           +RY++ +K+R  G    Y RKRL +V  K  Y
Sbjct: 736 RRYRLLYKKRPSGLQVRYGRKRLPIVWRKRNY 767


>SB_14693| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 245

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +2

Query: 68  KQYFKRYQVKFKRRREGKTDYYARKRL 148
           K +F+  ++K KR+R  +T+YY +  L
Sbjct: 124 KNWFQNRRMKRKRKRAEETEYYTKLAL 150


>SB_3427| Best HMM Match : Homeobox (HMM E-Value=4e-24)
          Length = 245

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +2

Query: 68  KQYFKRYQVKFKRRREGKTDYYARKRL 148
           K +F+  +VK KR+R  +T+YY +  L
Sbjct: 124 KIWFQNRRVKRKRKRAEETEYYTKLAL 150


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,810,380
Number of Sequences: 59808
Number of extensions: 241755
Number of successful extensions: 632
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 632
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 703143849
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)