Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_O24
(537 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0243 - 13271384-13272865,13272987-13273248,13274617-13276067 33 0.11
05_03_0634 + 16432679-16433076,16433358-16433610,16433993-164342... 31 0.77
01_06_0100 - 26424769-26425545,26425666-26425697,26425778-264258... 28 4.1
11_06_0300 + 22095396-22096145,22096261-22096344,22097062-220973... 28 5.4
06_01_0027 - 271199-271424,271628-272095,272721-273018,273133-27... 28 5.4
04_03_0199 - 12559351-12559433,12559693-12559827,12560260-125604... 27 7.2
12_01_0028 + 242016-242467,242547-242918,243027-243182,245007-24... 27 9.5
08_02_0731 - 20483518-20484154,20484182-20484375,20484541-204846... 27 9.5
05_01_0565 - 4926137-4926847,4926928-4927257 27 9.5
>04_03_0243 - 13271384-13272865,13272987-13273248,13274617-13276067
Length = 1064
Score = 33.5 bits (73), Expect = 0.11
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +2
Query: 305 AFNRQTSTSGHRSPPKISTTNG-LAPPASSGFPQPSPCRRSILTSRISK 448
A NR +++ H PP S +G +APP +S QP+P + L + + +
Sbjct: 96 ALNRLPTSAPHSPPPSSSAPSGAVAPPFASSLIQPNPTLSNALVAALKR 144
>05_03_0634 +
16432679-16433076,16433358-16433610,16433993-16434291,
16434553-16434729,16435001-16435621,16435690-16435784,
16436000-16436088,16436185-16436250,16436475-16437026,
16437879-16437953,16438305-16438375,16438456-16438513,
16441506-16442048
Length = 1098
Score = 30.7 bits (66), Expect = 0.77
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +2
Query: 323 STSGHRSPPKISTTNGLAPPASSGFPQPSPCRRSILTSRISKI 451
STSG +P + +T+ L+PP G +P RS S + I
Sbjct: 395 STSGSGNPKRTKSTHSLSPPTQWGGQRPQKISRSARKSNLVAI 437
>01_06_0100 -
26424769-26425545,26425666-26425697,26425778-26425894,
26426067-26426118,26426229-26426281,26426883-26427585
Length = 577
Score = 28.3 bits (60), Expect = 4.1
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +1
Query: 163 YHVYRFGPHLHLTHQVRLWS 222
+HV FGP+L + +VRLW+
Sbjct: 478 FHVLGFGPNLTIHQRVRLWA 497
>11_06_0300 +
22095396-22096145,22096261-22096344,22097062-22097304,
22098535-22098702,22098895-22099008,22099378-22099890
Length = 623
Score = 27.9 bits (59), Expect = 5.4
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = +2
Query: 284 SNYLYFHAFNRQTSTSGHRSPPKISTTNGLAPP--ASSGFPQPSP 412
S+Y+ H NR S+ G + P S+++ APP A+ G P P
Sbjct: 34 SSYVPPHLRNRGASSGGGAAAPPPSSSSSSAPPPRAAPGLLAPRP 78
>06_01_0027 - 271199-271424,271628-272095,272721-273018,273133-273343,
273427-274124,274921-274969,276059-276112,276244-276275,
276319-276484,276563-276628,276717-276812,276868-276957,
277302-277398,277496-277575,277709-277753,278006-278134,
278593-278722,278888-279222,279918-280053,280149-280328,
280422-280679,280752-281137
Length = 1409
Score = 27.9 bits (59), Expect = 5.4
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
Frame = -3
Query: 379 WRKTVRRGDL--WRRPMSRSGRLSVECMEXXXXXXXXXXXXXFELF*ILYR-LSALTTIS 209
W+K V + DL W++P++ +EC+ ++ Y+ + +
Sbjct: 1136 WKKVVEKDDLAIWQKPINH-----IECVNSRKIYETPQICKSNDVDSAWYKKMETCISPL 1190
Query: 208 PDVLSEDEVQNG 173
PDV SEDEV G
Sbjct: 1191 PDVNSEDEVAGG 1202
>04_03_0199 - 12559351-12559433,12559693-12559827,12560260-12560437,
12560848-12561389,12561398-12564827
Length = 1455
Score = 27.5 bits (58), Expect = 7.2
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = +3
Query: 261 IVETKIDTVIIYTSMHSTDRRPLLDIGLLQRSPRRTVLRHPHPADSHNLHHVV 419
+ + I+ + I+T RR LL+ LLQ TV RHP + HH V
Sbjct: 1330 VSQESINDISIFTVQQFAARRFLLE--LLQIDKSSTVSRHPSHQYAARSHHQV 1380
>12_01_0028 +
242016-242467,242547-242918,243027-243182,245007-245089,
245159-245222,245704-246001,246616-246726,247059-247100
Length = 525
Score = 27.1 bits (57), Expect = 9.5
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +2
Query: 338 RSPPKISTTNGLAPPASSGFPQPSPCRRSILTS 436
+SPP +TT+ PP S+ P P+ RS+L++
Sbjct: 7 QSPPSTTTTSPPPPPPST--PPPASSSRSLLSA 37
>08_02_0731 -
20483518-20484154,20484182-20484375,20484541-20484640,
20485282-20485622
Length = 423
Score = 27.1 bits (57), Expect = 9.5
Identities = 16/39 (41%), Positives = 18/39 (46%)
Frame = +2
Query: 314 RQTSTSGHRSPPKISTTNGLAPPASSGFPQPSPCRRSIL 430
R T GH P++S L PP S P P P R IL
Sbjct: 264 RDLVTCGHVHRPRLS--RWLHPPRRSSSPVPPPSPRRIL 300
>05_01_0565 - 4926137-4926847,4926928-4927257
Length = 346
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/37 (32%), Positives = 16/37 (43%)
Frame = +1
Query: 349 KDLHDERSCATRIQRIPTTFTMSSVHTYFTDIKNILN 459
K +H R TTFT+ VH +F K + N
Sbjct: 43 KKMHHHYCTTVLNARFETTFTVDQVHRHFRRFKEVWN 79
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,639,915
Number of Sequences: 37544
Number of extensions: 279574
Number of successful extensions: 1101
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1055
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1096
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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