Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_O24
         (537 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g13430.1 68414.m01568 sulfotransferase family protein similar...    31   0.64 
At5g60060.1 68418.m07531 F-box family protein various predicted ...    30   1.1  
At2g29140.1 68415.m03542 pumilio/Puf RNA-binding domain-containi...    29   2.0  
At5g57123.1 68418.m07133 expressed protein                             28   4.5  
At5g51800.1 68418.m06423 expressed protein                             28   4.5  
At5g06805.1 68418.m00769 reverse transcriptase-related low simil...    27   6.0  
At1g63880.1 68414.m07234 disease resistance protein (TIR-NBS-LRR...    27   6.0  
At4g29905.1 68417.m04255 expressed protein                             27   7.9  
At4g14660.1 68417.m02254 RNA polymerase Rpb7 N-terminal domain-c...    27   7.9  
At2g45550.1 68415.m05664 cytochrome P450 family protein                27   7.9  

>At1g13430.1 68414.m01568 sulfotransferase family protein similar to
           steroid sulfotransferase 3 GI:3420008 from (Brassica
           napus); contains Pfam profile PF00685: Sulfotransferase
           domain
          Length = 351

 Score = 30.7 bits (66), Expect = 0.64
 Identities = 25/67 (37%), Positives = 32/67 (47%)
 Frame = +3

Query: 231 SLYRI*KSSKIVETKIDTVIIYTSMHSTDRRPLLDIGLLQRSPRRTVLRHPHPADSHNLH 410
           S+  I  S +  ET I     Y S   T     L   L+QRS + ++  H HP  SHN H
Sbjct: 58  SIPNIHSSFQPQETDIVVASFYKS--GTTWLKALTFALVQRS-KHSLEDHHHPLLSHNPH 114

Query: 411 HVVGPYL 431
            +V PYL
Sbjct: 115 EIV-PYL 120


>At5g60060.1 68418.m07531 F-box family protein various predicted
           proteins, Arabidopsis thaliana ; similar to SKP1
           interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
          Length = 374

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 18/57 (31%), Positives = 32/57 (56%)
 Frame = +3

Query: 75  LYCFVSICFKFKLYLSCRVSSSKT*EPVPLSCLPFWTSSSLNTSGEIVVKALSLYRI 245
           L C  S+C  ++L L     +++     P   LPFW+SSS ++SG   +K  ++Y++
Sbjct: 36  LLCLRSVCATWRLSLPLSNKNNRL-SKFP-KYLPFWSSSS-SSSGFFTLKQSNVYKL 89


>At2g29140.1 68415.m03542 pumilio/Puf RNA-binding domain-containing
           protein 
          Length = 964

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +2

Query: 353 ISTTNGLAPPASSGFPQPSP-CRRSILTSRISK 448
           + + N L+P AS G   PSP C  ++L S +S+
Sbjct: 222 VDSNNNLSPSASQGIGAPSPYCYAAVLGSSLSR 254


>At5g57123.1 68418.m07133 expressed protein
          Length = 67

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 72  FLYCFVSICFKFKLYLSC 125
           +++CFV +CFK K   SC
Sbjct: 39  WMFCFVPLCFKIKRKYSC 56


>At5g51800.1 68418.m06423 expressed protein
          Length = 972

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 347 PKISTTNGLAPPASSGFPQPS 409
           P+ ST++GL+PP     P PS
Sbjct: 67  PRFSTSSGLSPPQWKALPSPS 87


>At5g06805.1 68418.m00769 reverse transcriptase-related low
           similarity to reverse transcriptase [Arabidopsis
           thaliana] GI:976278
          Length = 594

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -3

Query: 415 TW*RLWESAGCGWRKTVRRGDLW 347
           TW  LW S   G R+ V RG  W
Sbjct: 196 TWSALWRSVNVGLREVVNRGIGW 218


>At1g63880.1 68414.m07234 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1017

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 11/19 (57%), Positives = 16/19 (84%)
 Frame = +2

Query: 221 QGT*PIQNLKKFENSRNKN 277
           QGT P++NLKK + S++KN
Sbjct: 623 QGTQPLKNLKKMDLSQSKN 641


>At4g29905.1 68417.m04255 expressed protein
          Length = 67

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 72  FLYCFVSICFKFKLYLSC 125
           +L+CF+ +CFK K   SC
Sbjct: 39  WLFCFLPLCFKVKRKYSC 56


>At4g14660.1 68417.m02254 RNA polymerase Rpb7 N-terminal
           domain-containing protein similar to SP|P52433
           DNA-directed RNA polymerase II 19 kDa polypeptide (EC
           2.7.7.6) (RPB7) {Rattus norvegicus}; contains Pfam
           profile PF03876: RNA polymerase Rpb7, N-terminal domain
          Length = 178

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -2

Query: 428 VWTDDMVKVVGIRWMRVAQDRSSWRSLEETYV 333
           V T   V V+GI+WM V ++  +  SLE  Y+
Sbjct: 141 VETTVRVVVIGIKWMEVEREFQALASLEGDYL 172


>At2g45550.1 68415.m05664 cytochrome P450 family protein 
          Length = 511

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +3

Query: 48  VIFAKQFFFLYCFVSICFKFKLYLSCRVSSSK 143
           +I  +  F L+CF+S CF        R SS +
Sbjct: 3   IISGQALFLLFCFISSCFLISTTARSRRSSGR 34


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,069,370
Number of Sequences: 28952
Number of extensions: 227190
Number of successful extensions: 806
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 993966856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)