Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_O23
         (481 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0169 + 1880490-1880623,1880985-1881236,1881315-1881425,188...    30   0.85 
09_04_0301 + 16498346-16498501,16498805-16499274,16500023-16500131     28   4.5  
09_04_0260 - 16197522-16197669,16198027-16198130,16198508-161987...    27   6.0  
06_01_0597 - 4312592-4313893                                           27   7.9  

>04_01_0169 +
           1880490-1880623,1880985-1881236,1881315-1881425,
           1881514-1881592,1881676-1881768,1881849-1882034
          Length = 284

 Score = 30.3 bits (65), Expect = 0.85
 Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
 Frame = -1

Query: 358 PTRVQRTRLLTLVINADMGGKKMRTQTLTR----YRDGFA*MDA 239
           PTR   TR   +V+ A  GGK+MR   + R     R G   MDA
Sbjct: 8   PTRTMSTRHQVIVVQARNGGKRMRVNKVIRTTFPVRKGMQYMDA 51


>09_04_0301 + 16498346-16498501,16498805-16499274,16500023-16500131
          Length = 244

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +1

Query: 169 GSQPPTQPPGDDYEYTGGSGDGYQRPSKR 255
           G +P  +PP D+    GG G G   PS R
Sbjct: 15  GGEPLHEPPEDEDAVDGGGGGGGATPSTR 43


>09_04_0260 -
           16197522-16197669,16198027-16198130,16198508-16198719,
           16198795-16198900,16199006-16199119,16199200-16199417,
           16199837-16199900,16199982-16200335,16200609-16200767,
           16201486-16202907
          Length = 966

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = -1

Query: 358 PTRVQRTRLLTLVINADMGG 299
           P R+   RLLTLV N D GG
Sbjct: 241 PARLIEPRLLTLVTNCDFGG 260


>06_01_0597 - 4312592-4313893
          Length = 433

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -1

Query: 82  GRRSSQPMKTWRALQRRAPSSAAPQP 5
           GR ++  ++TW ++ R AP++ AP P
Sbjct: 164 GRSAAHFVETWASIARGAPAADAPVP 189


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,438,349
Number of Sequences: 37544
Number of extensions: 141726
Number of successful extensions: 462
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 460
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)