Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_O23
         (481 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27522| Best HMM Match : PspB (HMM E-Value=0.56)                     29   2.6  
SB_16998| Best HMM Match : Filamin (HMM E-Value=0.0037)                28   4.6  

>SB_27522| Best HMM Match : PspB (HMM E-Value=0.56)
          Length = 314

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 20/75 (26%), Positives = 34/75 (45%)
 Frame = -1

Query: 430 KDYATTINAQVIKSASTEVHVGLSPTRVQRTRLLTLVINADMGGKKMRTQTLTRYRDGFA 251
           KD+ T  N     SA  +  + +    +    +L +V       +K R++ LT+Y DG  
Sbjct: 188 KDFQTDFNIFEKDSAIFQDGLRIFGATLAFLVVLAIVWEIIYRKRKRRSKNLTKYEDGEL 247

Query: 250 *MDAGNRHLNPQCTH 206
            M + N+ L+P   H
Sbjct: 248 AMASHNKRLSPAEIH 262


>SB_16998| Best HMM Match : Filamin (HMM E-Value=0.0037)
          Length = 284

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -1

Query: 82  GRRSSQPMKTWRALQRRAPSSAAP 11
           GRR S    TWR   R+ P+S AP
Sbjct: 121 GRRKSSGGDTWRVYIRQGPASLAP 144


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,483,147
Number of Sequences: 59808
Number of extensions: 153945
Number of successful extensions: 389
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 389
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1001731762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)