Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_O23
         (481 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g20150.1 68416.m02554 kinesin motor family protein contains P...    28   3.7  
At4g10070.1 68417.m01647 KH domain-containing protein DNA-direct...    27   5.0  
At4g09430.1 68417.m01553 disease resistance protein (TIR-NBS-LRR...    27   6.5  
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ...    27   8.7  
At4g17300.1 68417.m02598 asparaginyl-tRNA synthetase, chloroplas...    27   8.7  

>At3g20150.1 68416.m02554 kinesin motor family protein contains Pfam
           domain, PF00225: Kinesin motor domain
          Length = 1114

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -1

Query: 400 VIKSASTEVHVGLSPTRVQRTRLLTLVINADMGGKKMRT 284
           V+ S +  VH G+S   + +T  LT ++   +GG    T
Sbjct: 370 VVNSLAENVHPGISDRSLHKTSCLTHLLQESLGGNSKLT 408


>At4g10070.1 68417.m01647 KH domain-containing protein DNA-directed
           RNA polymerase (EC 2.7.7.6) II largestchain - mouse,
           PIR2:A28490
          Length = 725

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
 Frame = +1

Query: 166 HGSQPPTQPP-GDDYEYTGGSGDGY---QRPSKR 255
           + S PP QPP G  Y   GG   GY   Q+P  R
Sbjct: 500 YDSNPPMQPPYGGSYPPAGGGQSGYYQMQQPGVR 533


>At4g09430.1 68417.m01553 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1039

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +2

Query: 365 PYVDFR*RGLYYLCVDSCRVIFEPTKSLMLFDVTTLY 475
           P +D + RGL  LC+D+C+ +      L+ ++ +  Y
Sbjct: 840 PGLDNQPRGLIELCIDNCKNLQSLQDQLLCYNTSLAY 876


>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
           DNA binding protein ACBF - Nicotiana tabacum,
           PID:g1899188
          Length = 415

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
 Frame = +1

Query: 160 EYHGSQPPTQPPGDDYE-YTGGSGDGYQRP 246
           E +G  PP Q P   Y  Y GG    YQ+P
Sbjct: 378 EAYGYAPPPQDPNAYYGGYAGGGYGNYQQP 407


>At4g17300.1 68417.m02598 asparaginyl-tRNA synthetase, chloroplast,
           mitochondrial / asparagine-tRNA ligase / AsnRS (SYNO)
           nearly identical to SP|O48593
          Length = 567

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = +3

Query: 252 AKPSRYLVRVCVRIFLPPISALMTNVNNRVRCTRVGDN 365
           + PS  L R   R  LPP  A   N   R  CT V ++
Sbjct: 28  SNPSYSLFRPLRRRVLPPFDAFPANSRRRCFCTAVSES 65


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,369,525
Number of Sequences: 28952
Number of extensions: 99765
Number of successful extensions: 284
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 283
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 819227264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)