Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_O22
         (542 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g40480.1 68418.m04909 expressed protein ; expression supporte...    30   1.1  
At5g28590.1 68418.m03487 DNA-binding protein-related contains si...    27   6.1  
At2g21050.1 68415.m02499 amino acid permease, putative similar t...    27   6.1  
At5g11980.1 68418.m01401 conserved oligomeric Golgi complex comp...    27   8.1  
At5g10490.1 68418.m01215 mechanosensitive ion channel domain-con...    27   8.1  
At5g01240.2 68418.m00032 amino acid permease, putative strong si...    27   8.1  
At5g01240.1 68418.m00031 amino acid permease, putative strong si...    27   8.1  
At1g77550.1 68414.m09030 tubulin-tyrosine ligase family protein ...    27   8.1  

>At5g40480.1 68418.m04909 expressed protein ; expression supported by
            MPSS
          Length = 1919

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +1

Query: 1    VNRHGATLTNTHIPGIGDKLSVAGKVNLFHNNDH 102
            V+  G TLTN H+P  G K  V  + N F   +H
Sbjct: 1610 VDSPGETLTNVHVPAEGYKFPVKFRENKFAVTEH 1643


>At5g28590.1 68418.m03487 DNA-binding protein-related contains
           similarity to DNA-binding proteins
          Length = 216

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = +1

Query: 130 RNMPTISHLPSTNTVGGGLEYMFKDKIGASASAAHTDFFNKNDYNLGGK 276
           RN     H  +++ +GGG  +M K   G   + A    +    Y+L GK
Sbjct: 166 RNPNDEHHTITSSALGGGAHFMMKPPQGMHMTHARPSEWGGTGYDLSGK 214


>At2g21050.1 68415.m02499 amino acid permease, putative similar to
           AUX1 [Arabidopsis thaliana] GI:1531758; contains Pfam
           profile PF01490: Transmembrane amino acid transporter
           protein
          Length = 483

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +1

Query: 274 KLNLFKTPSTSLDFTAGWHKFDTPFMKSSWEPSTWFSL 387
           KL L+ T +T++ +T G H      M + W+P  + S+
Sbjct: 225 KLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKSI 262


>At5g11980.1 68418.m01401 conserved oligomeric Golgi complex
           component-related / COG complex component-related
           similar to SP|Q96MW5 Conserved oligomeric Golgi complex
           component 8 {Homo sapiens}; contains Pfam profile
           PF04124: Dor1-like family
          Length = 569

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 12/48 (25%), Positives = 24/48 (50%)
 Frame = +2

Query: 122 SRPEICPPFPIYHQPTLLVVVSNICSRTRSVHQRAPLTLISLTRMTII 265
           S+ ++ PP  +   P L V ++ + S    +   APL+L ++    +I
Sbjct: 390 SKDDVTPPSYLMEHPPLAVFINGVSSALNELRPCAPLSLKNVVAHELI 437


>At5g10490.1 68418.m01215 mechanosensitive ion channel
           domain-containing protein / MS ion channel
           domain-containing protein contains Pfam profile PF00924:
           Mechanosensitive ion channel
          Length = 519

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +3

Query: 96  RP*FIREGVRDQKYAHHFPFTINQHCWWWSRIYVQGQDR 212
           RP  + E ++ +   +    T+ +H  WWS   ++G+DR
Sbjct: 142 RPFVLNEWIQTKIEGYEVSGTV-EHVGWWSPTIIRGEDR 179


>At5g01240.2 68418.m00032 amino acid permease, putative strong
           similarity to AUX1 GI:1531758 from [Arabidopsis
           thaliana]; contains Pfam profile PF01490: Transmembrane
           amino acid transporter protein
          Length = 408

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +1

Query: 274 KLNLFKTPSTSLDFTAGWHKFDTPFMKSSWEPSTWFSL 387
           KL L+ T +T++ +T G H      M + W+P  + S+
Sbjct: 157 KLVLYFTGATNILYTFGGHAVTVEIMHAMWKPRKFKSI 194


>At5g01240.1 68418.m00031 amino acid permease, putative strong
           similarity to AUX1 GI:1531758 from [Arabidopsis
           thaliana]; contains Pfam profile PF01490: Transmembrane
           amino acid transporter protein
          Length = 488

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +1

Query: 274 KLNLFKTPSTSLDFTAGWHKFDTPFMKSSWEPSTWFSL 387
           KL L+ T +T++ +T G H      M + W+P  + S+
Sbjct: 237 KLVLYFTGATNILYTFGGHAVTVEIMHAMWKPRKFKSI 274


>At1g77550.1 68414.m09030 tubulin-tyrosine ligase family protein
           contains tubulin-tyrosine ligase family domain,
           Pfam:PF03133
          Length = 867

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +1

Query: 76  VNLFHNNDHDLSAKAFATRNMPTISHL 156
           ++L + + H+L  KAF+   MP +SHL
Sbjct: 281 LDLSNRSIHNLVNKAFSVHEMPLLSHL 307


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,481,650
Number of Sequences: 28952
Number of extensions: 234259
Number of successful extensions: 607
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 607
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1013649368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)