Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_O20
         (358 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1208 + 9733010-9733114,9733920-9733979,9735254-9736280,973...    27   4.3  
11_06_0648 + 25873779-25874279,25874418-25875548                       26   7.6  
11_01_0721 - 5952723-5953118,5953450-5953593,5955126-5955185,595...    26   7.6  
09_03_0170 - 13035371-13036504                                         26   7.6  

>01_01_1208 +
           9733010-9733114,9733920-9733979,9735254-9736280,
           9736332-9736621
          Length = 493

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
 Frame = -2

Query: 315 TLS*TNPAVAAPNLIWLVRSTKPRALSL*FSF-PVIGTLTIAPEVPSELIVSSPACRRT 142
           TL   +PA AA + IW     KP    +  SF P +     APE P  L  +  A  R+
Sbjct: 428 TLRIDDPAEAAKSSIWATLGIKPDDKGIFKSFQPNVAKNGTAPESPQALQANPAAFSRS 486


>11_06_0648 + 25873779-25874279,25874418-25875548
          Length = 543

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +3

Query: 135 VPGCAGKRVNLQLILMEPQVLWSRYRXLETKITSSVLLASLISL 266
           V  C  K    QL++   Q    R+R ++++I S +LL  +ISL
Sbjct: 88  VLSCQDKSAVYQLVMARRQA--DRFRDVQSRIDSYLLLVPVISL 129


>11_01_0721 -
           5952723-5953118,5953450-5953593,5955126-5955185,
           5955318-5955464,5955962-5956123,5956278-5956373,
           5956524-5956622
          Length = 367

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 209 PXTGNENHKLSALGFVDLTNQIKLGAATAGL 301
           P  G +   L+  GFV ++N+   GAA A L
Sbjct: 190 PQNGVDCFNLNCAGFVQISNEYAFGAALAPL 220


>09_03_0170 - 13035371-13036504
          Length = 377

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +3

Query: 150 GKRVNLQLILMEPQVLWSRYRXLETKITSSVLLASLISLTKLNW 281
           GK+V+L + L E  + W +   L ++   +  L +++  TK NW
Sbjct: 255 GKKVHL-VKLNEQSMEWEKVDSLHSQTVFTGSLTTMMKKTKFNW 297


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,674,249
Number of Sequences: 37544
Number of extensions: 144881
Number of successful extensions: 312
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 308
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 312
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 542368620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)