Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_O20
         (358 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117200-15|CAB55049.2|  609|Caenorhabditis elegans Hypothetical...    28   1.7  
U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p...    26   8.9  

>AL117200-15|CAB55049.2|  609|Caenorhabditis elegans Hypothetical
           protein Y50E8A.6 protein.
          Length = 609

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 2/66 (3%)
 Frame = +2

Query: 167 TINSDGTSGAMVKVPXTGNENHKLSALGFVDLTNQIKLGAAT--AGLVYDNVNRHGATLT 340
           TI  +G  GAM+     GN+   +  +    + N  K    T   GL+ D+  +    L 
Sbjct: 199 TIRQEGLKGAMLYYDGQGNDARLVLVVALTAIRNGAKCVNHTECIGLLKDSYGKVNGALV 258

Query: 341 NTHIPG 358
             HI G
Sbjct: 259 KDHISG 264


>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
            protein T19D12.1 protein.
          Length = 1844

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 13/61 (21%), Positives = 28/61 (45%)
 Frame = +2

Query: 167  TINSDGTSGAMVKVPXTGNENHKLSALGFVDLTNQIKLGAATAGLVYDNVNRHGATLTNT 346
            T+ + G++G+ V  P T +     S+   +  +     G++T+G          +T TN+
Sbjct: 1548 TVPNTGSTGSTVTNPSTSSSTSGSSSTQSIPSSTAANTGSSTSGPTVATTQGSSSTQTNS 1607

Query: 347  H 349
            +
Sbjct: 1608 N 1608


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,986,950
Number of Sequences: 27780
Number of extensions: 109976
Number of successful extensions: 220
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 482051610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)