Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_O20
         (358 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g43990.2 68418.m05382 SET domain-containing protein identical...    30   0.52 
At5g43990.1 68418.m05383 SET domain-containing protein identical...    30   0.52 
At5g25280.2 68418.m02999 serine-rich protein-related contains so...    28   1.6  
At5g25280.1 68418.m02998 serine-rich protein-related contains so...    28   1.6  
At4g28760.2 68417.m04113 expressed protein predicted protein. Ar...    27   4.9  
At4g28760.1 68417.m04112 expressed protein predicted protein. Ar...    27   4.9  
At3g47440.1 68416.m05158 major intrinsic family protein / MIP fa...    26   8.5  

>At5g43990.2 68418.m05382 SET domain-containing protein identical to
           SET domain protein SUVR2 [Arabidopsis thaliana]
           GI:15290521; contains Pfam profiles PF00856: SET domain,
           PF05033: Pre-SET motif; identical to cDNA SET domain
           protein SUVR2 GI:15290520
          Length = 740

 Score = 29.9 bits (64), Expect = 0.52
 Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
 Frame = +2

Query: 131 TSSRVRRQAGELTINSDGTSGAMVKVPXTGNENHKLSALGFVDLTNQIKLGAATAGLVYD 310
           ++  V  +AGE    +DGT+  +         +HKL+A   ++    ++L ++ +G V  
Sbjct: 219 SNGHVEEKAGETVSTADGTTNDISPTTVARFSDHKLAAT--IEEPPALELASSASGEVKI 276

Query: 311 NVNRHGAT-LTNTHIP 355
           N++   AT  +N H+P
Sbjct: 277 NLSFAPATGGSNPHLP 292


>At5g43990.1 68418.m05383 SET domain-containing protein identical to
           SET domain protein SUVR2 [Arabidopsis thaliana]
           GI:15290521; contains Pfam profiles PF00856: SET domain,
           PF05033: Pre-SET motif; identical to cDNA SET domain
           protein SUVR2 GI:15290520
          Length = 717

 Score = 29.9 bits (64), Expect = 0.52
 Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
 Frame = +2

Query: 131 TSSRVRRQAGELTINSDGTSGAMVKVPXTGNENHKLSALGFVDLTNQIKLGAATAGLVYD 310
           ++  V  +AGE    +DGT+  +         +HKL+A   ++    ++L ++ +G V  
Sbjct: 196 SNGHVEEKAGETVSTADGTTNDISPTTVARFSDHKLAAT--IEEPPALELASSASGEVKI 253

Query: 311 NVNRHGAT-LTNTHIP 355
           N++   AT  +N H+P
Sbjct: 254 NLSFAPATGGSNPHLP 269


>At5g25280.2 68418.m02999 serine-rich protein-related contains some
           similarity to serine-rich proteins
          Length = 220

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 19/65 (29%), Positives = 25/65 (38%)
 Frame = +2

Query: 131 TSSRVRRQAGELTINSDGTSGAMVKVPXTGNENHKLSALGFVDLTNQIKLGAATAGLVYD 310
           TSSR  R  G  ++ S   SG    V      +   S+ GF   T+      +TA     
Sbjct: 4   TSSRTTRSNGSASLRSKSPSGRFCGVYSNRMPSSSPSSSGFASSTSSSFSSPSTAFFSSH 63

Query: 311 NVNRH 325
           N N H
Sbjct: 64  NQNNH 68


>At5g25280.1 68418.m02998 serine-rich protein-related contains some
           similarity to serine-rich proteins
          Length = 220

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 19/65 (29%), Positives = 25/65 (38%)
 Frame = +2

Query: 131 TSSRVRRQAGELTINSDGTSGAMVKVPXTGNENHKLSALGFVDLTNQIKLGAATAGLVYD 310
           TSSR  R  G  ++ S   SG    V      +   S+ GF   T+      +TA     
Sbjct: 4   TSSRTTRSNGSASLRSKSPSGRFCGVYSNRMPSSSPSSSGFASSTSSSFSSPSTAFFSSH 63

Query: 311 NVNRH 325
           N N H
Sbjct: 64  NQNNH 68


>At4g28760.2 68417.m04113 expressed protein predicted protein.
           Arabidopsis thaliana
          Length = 924

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 10/12 (83%), Positives = 10/12 (83%)
 Frame = +3

Query: 132 PVPGCAGKRVNL 167
           PVPGC GK VNL
Sbjct: 15  PVPGCLGKMVNL 26


>At4g28760.1 68417.m04112 expressed protein predicted protein.
           Arabidopsis thaliana
          Length = 924

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 10/12 (83%), Positives = 10/12 (83%)
 Frame = +3

Query: 132 PVPGCAGKRVNL 167
           PVPGC GK VNL
Sbjct: 15  PVPGCLGKMVNL 26


>At3g47440.1 68416.m05158 major intrinsic family protein / MIP
           family protein contains Pfam profile: MIP PF00230
          Length = 256

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 11/13 (84%), Positives = 11/13 (84%)
 Frame = +2

Query: 278 LGAATAGLVYDNV 316
           LG ATA LVYDNV
Sbjct: 226 LGGATAALVYDNV 238


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,688,773
Number of Sequences: 28952
Number of extensions: 106296
Number of successful extensions: 250
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 250
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 459356736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)