Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_O18
(510 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0007 - 12074472-12074538,12074908-12075116,12077202-120774... 77 8e-15
02_05_1305 - 35586499-35586601,35586963-35587034,35587111-355872... 31 0.41
01_06_1239 + 35652053-35654050 30 0.94
04_04_1284 + 32376870-32376874,32376876-32376935,32377166-323773... 29 2.9
06_03_0403 - 20435349-20435358,20435750-20436204,20436744-20438315 28 3.8
10_08_0801 + 20670795-20671730 27 6.6
09_02_0177 - 5390594-5390692,5391924-5391998,5392843-5392942,539... 27 6.6
03_05_1163 - 30847591-30847663,30847909-30848042,30848443-308484... 27 6.6
03_02_0538 + 9299639-9300046,9300362-9300509,9300648-9300652,930... 27 6.6
01_06_0210 - 27559090-27559239,27560445-27560567,27561069-275611... 27 6.6
11_06_0701 + 26407055-26407597,26407794-26409644 27 8.8
11_01_0368 + 2800597-2801037,2802282-2802314,2802789-2802876,280... 27 8.8
04_04_1477 + 33873976-33874080,33874433-33874544,33874777-338748... 27 8.8
>11_04_0007 -
12074472-12074538,12074908-12075116,12077202-12077463,
12077547-12078043,12078651-12078719,12079258-12079363,
12080272-12080295,12081184-12081242,12081383-12081520
Length = 476
Score = 77.0 bits (181), Expect = 8e-15
Identities = 44/158 (27%), Positives = 78/158 (49%), Gaps = 3/158 (1%)
Frame = +2
Query: 2 LKGFEPQQRIKLARMTALWIG---NGCVPPSVLLVLVNEHLLKDNLALEFVLEVFATVKQ 172
L+ FE +R KLA TAL +G P +V L+ ++L+ + L F+ E F +
Sbjct: 200 LEFFEENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLVSKGIVLSFITEFFKEYLK 259
Query: 173 ERGVASLIAALKRGQLEGRLLEFLPLNRRSEDVLATSFASRGLAELLRLHRAQASQEARR 352
E + LIA LK+G++E LLEF P +R+ + L+ F GL L+ + + + +
Sbjct: 260 ENTLDDLIALLKKGKMEDNLLEFFPSAKRTSEALSEHFTKEGLTSLVEYNEKKMFEVKLK 319
Query: 353 ELTQALLDELAEEKPVRDLIQDLRDMALKHSIPEHETI 466
E+ L + EE + ++ + ++ P+ E +
Sbjct: 320 EIKLTLTTMINEEAEISEVTEAVKQQVKDAKFPDIEVV 357
>02_05_1305 -
35586499-35586601,35586963-35587034,35587111-35587232,
35587767-35587826,35587919-35587997,35588219-35588307,
35588405-35588492,35591761-35591821,35592546-35592890,
35593094-35594351
Length = 758
Score = 31.5 bits (68), Expect = 0.41
Identities = 19/77 (24%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Frame = +2
Query: 242 LPLNRRSEDVLATSFASRGLA-ELLRLHRAQASQEARRELT--QALLDELAEEKPVRDLI 412
+PL+R S + + + +G+ E + + +Q + ++ +L+ L +E+ V++
Sbjct: 211 VPLDRFSFNTVIALYCRKGMQYEAMCVRERMENQGVKADVVTWNSLIHGLCKERRVKEAS 270
Query: 413 QDLRDMALKHSIPEHET 463
Q LR+MA+ P+H T
Sbjct: 271 QLLREMAMAGVAPDHVT 287
>01_06_1239 + 35652053-35654050
Length = 665
Score = 30.3 bits (65), Expect = 0.94
Identities = 39/157 (24%), Positives = 69/157 (43%)
Frame = +2
Query: 8 GFEPQQRIKLARMTALWIGNGCVPPSVLLVLVNEHLLKDNLALEFVLEVFATVKQERGVA 187
G +P I + + ++W+ G + + L E L + ++ VL V ER A
Sbjct: 416 GIQPNA-ITYSTILSIWVKAGKLDRAGKLF---EKLREAGTEIDPVLYQTMVVAYER--A 469
Query: 188 SLIAALKRGQLEGRLLEFLPLNRRSEDVLATSFASRGLAELLRLHRAQASQEARRELTQA 367
L++ KR + + E +P + +LA + A L R A A + +
Sbjct: 470 GLVSQSKRLLHDLKDSEDVP-KETAIKILANAGRVEEAAWLFR-RAADAGDVRDTSVYRM 527
Query: 368 LLDELAEEKPVRDLIQDLRDMALKHSIPEHETIAINM 478
++D A+ + R +I+ +M S+P+ ETIAI M
Sbjct: 528 MIDLFAKSRRHRSVIEVFDEMRKAGSLPDSETIAITM 564
>04_04_1284 +
32376870-32376874,32376876-32376935,32377166-32377301,
32377439-32377596,32377791-32377881,32377975-32378094,
32378166-32378234,32378354-32378445,32378578-32378680,
32378761-32378868,32378949-32379011,32379073-32379144,
32379322-32379399,32379478-32379540,32379617-32379680,
32379817-32379902,32380456-32380569,32380760-32380837,
32381068-32381303,32381486-32381576,32381706-32381894,
32382082-32382117
Length = 703
Score = 28.7 bits (61), Expect = 2.9
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = -1
Query: 294 REANDVASTSSLRRFRGRNSNNLPSSWPRLSAAISEATPRS 172
++A DVA T + RR RGR + ++ + S + S A RS
Sbjct: 566 KDATDVAKTGTSRRGRGRGTASMKQTTLNFSQSRSSAAIRS 606
>06_03_0403 - 20435349-20435358,20435750-20436204,20436744-20438315
Length = 678
Score = 28.3 bits (60), Expect = 3.8
Identities = 19/50 (38%), Positives = 26/50 (52%)
Frame = -1
Query: 327 ARCNLSSSASPREANDVASTSSLRRFRGRNSNNLPSSWPRLSAAISEATP 178
A +LSSS SP + D A+ S R ++ SSW SAA + A+P
Sbjct: 616 ATSSLSSSPSPAPSPDSATAS--RSASPTSARPATSSWTCTSAATASASP 663
>10_08_0801 + 20670795-20671730
Length = 311
Score = 27.5 bits (58), Expect = 6.6
Identities = 15/29 (51%), Positives = 18/29 (62%)
Frame = +2
Query: 296 GLAELLRLHRAQASQEARRELTQALLDEL 382
GLA+LL H QA RR T+ LLD+L
Sbjct: 88 GLADLL--HHPQAQDALRRPWTEQLLDDL 114
>09_02_0177 -
5390594-5390692,5391924-5391998,5392843-5392942,
5393143-5393244,5393335-5393444,5393896-5393968,
5394976-5395043,5395382-5395475,5396804-5397165
Length = 360
Score = 27.5 bits (58), Expect = 6.6
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +2
Query: 278 TSFASRGLAELLRLHRA-QASQEARRELTQALLDELAE 388
T+ R +AE LRL A QA+ E R L + L DE+ E
Sbjct: 245 TNAKERNVAEPLRLDEAAQANIEKYRNLQEDLTDEIVE 282
>03_05_1163 -
30847591-30847663,30847909-30848042,30848443-30848484,
30848613-30848654,30849362-30849461,30849605-30849666,
30851001-30851015,30851098-30851179,30853510-30853694
Length = 244
Score = 27.5 bits (58), Expect = 6.6
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Frame = +2
Query: 248 LNRRSEDVLATSFASRGLAELLRLHR--AQASQEARRELTQALLDELAEEKPVRDLIQDL 421
L + ++L A EL +L + ++ R TQ LLDEL + K ++QD
Sbjct: 110 LQQSQRNLLGEDLAPLATNELEQLESQVVRTLKQIRSRKTQVLLDELCDLKRKEQMLQD- 168
Query: 422 RDMALKHSIPE 454
+ LK + E
Sbjct: 169 ANRVLKRKLDE 179
>03_02_0538 +
9299639-9300046,9300362-9300509,9300648-9300652,
9302886-9303290,9303379-9304608
Length = 731
Score = 27.5 bits (58), Expect = 6.6
Identities = 26/99 (26%), Positives = 39/99 (39%), Gaps = 1/99 (1%)
Frame = +2
Query: 83 SVLLVLVNEHLLKDNLALEFVLEVFATVKQERGVASLIAALKRGQLEGRLLEFLPLNRRS 262
S+ V EH++ L L E A + V ++ LKRG +E R L S
Sbjct: 445 SITDVSTQEHVVTALLNLSIYEENKARIITSGAVPGVVHVLKRGSMEARENSAATLFSLS 504
Query: 263 -EDVLATSFASRGLAELLRLHRAQASQEARRELTQALLD 376
D + + G L L + SQ +R+ AL +
Sbjct: 505 LVDENKITIGASGAIPALVLLLSNGSQRGKRDAATALFN 543
>01_06_0210 -
27559090-27559239,27560445-27560567,27561069-27561128,
27562045-27562068,27562313-27562653,27562684-27563731
Length = 581
Score = 27.5 bits (58), Expect = 6.6
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 5/77 (6%)
Frame = +2
Query: 248 LNRRSEDVLATSFASRGLAELLRLHRAQASQEARRELTQA-----LLDELAEEKPVRDLI 412
L+ R D + T+ S+G E++R + S R T+ L++ L+++ +
Sbjct: 376 LHGRINDAVVTALCSKG--EVVRAFQVYQSMRTRGISTKPTTFHLLVECLSKKNNLEKAA 433
Query: 413 QDLRDMALKHSIPEHET 463
+RDM + IPE ET
Sbjct: 434 HVVRDMLSERCIPERET 450
>11_06_0701 + 26407055-26407597,26407794-26409644
Length = 797
Score = 27.1 bits (57), Expect = 8.8
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Frame = +3
Query: 252 TVAVRMYWRRRLPLEDLL--NY*DCIGHRLH 338
T+ +R + R L L DLL DCIGH +H
Sbjct: 420 TIFMRFMYLRVLDLSDLLVEKIPDCIGHLIH 450
>11_01_0368 +
2800597-2801037,2802282-2802314,2802789-2802876,
2802984-2803465,2803552-2803818,2803955-2804304,
2804396-2804945
Length = 736
Score = 27.1 bits (57), Expect = 8.8
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = +2
Query: 275 ATSFASRGLAELLRLHRAQASQ 340
A SF SRGL E LRL RA+A +
Sbjct: 29 ALSFLSRGLREDLRLIRARAGE 50
>04_04_1477 + 33873976-33874080,33874433-33874544,33874777-33874874,
33875548-33876261,33876348-33876518,33876955-33877011,
33877096-33878718
Length = 959
Score = 27.1 bits (57), Expect = 8.8
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = -1
Query: 327 ARCNLSSSASPREANDVASTSSLRRFRGRNSNNLPSSWPRLSAAISEA 184
AR S+S SP+ + DV + +R +N S PR+ + S+A
Sbjct: 893 ARAKASASVSPKLSPDVQDNNPRKRHSLPMTNGKQDSSPRMQRSSSQA 940
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,470,891
Number of Sequences: 37544
Number of extensions: 164001
Number of successful extensions: 739
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 739
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1095026320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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