Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_O18
         (510 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z34802-4|CAA84335.4|  365|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AF043700-2|AAB97570.1|  283|Caenorhabditis elegans Collagen prot...    28   3.4  
U58734-5|AAB52504.3|  870|Caenorhabditis elegans Hypothetical pr...    28   4.5  
AC006673-3|AAF39929.1|  861|Caenorhabditis elegans Hypothetical ...    27   6.0  

>Z34802-4|CAA84335.4|  365|Caenorhabditis elegans Hypothetical
           protein M88.4 protein.
          Length = 365

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2

Query: 332 PVPDAISVVQQVLERQTTSPVHPHC 258
           P  D + VV  VL  +  SP+H HC
Sbjct: 99  PFDDVVGVVMLVLNPEMQSPMHVHC 123


>AF043700-2|AAB97570.1|  283|Caenorhabditis elegans Collagen protein
           49 protein.
          Length = 283

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 15/48 (31%), Positives = 21/48 (43%)
 Frame = +1

Query: 157 RDGEAGARSRFADRGAQARPARGKVIGVPSSEPSQ*GCTGDVVCLSRT 300
           +DG  GA  R A+ G   +  +  V GVP +   +    G   C  RT
Sbjct: 235 KDGALGAPGRKAENGRPGKRGKDGVAGVPGTRGKEGEDAGYCTCPPRT 282


>U58734-5|AAB52504.3|  870|Caenorhabditis elegans Hypothetical
           protein T27A10.6 protein.
          Length = 870

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -1

Query: 300 SPREANDVASTSSLRRFRGRNS 235
           SP + N VA T + RRFRGR +
Sbjct: 562 SPSQRNQVAVTQTPRRFRGRTT 583


>AC006673-3|AAF39929.1|  861|Caenorhabditis elegans Hypothetical
           protein K09D9.11 protein.
          Length = 861

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 25/101 (24%), Positives = 50/101 (49%), Gaps = 7/101 (6%)
 Frame = +2

Query: 80  PSVL-LVLVNEHLLK----DNLALEFVLEVFATVKQERGVASLIAALKRGQLEGR--LLE 238
           PS+L ++ V   LL     D  AL+ + E F  + +     S+ A++ R  ++ R  + E
Sbjct: 5   PSILRIIFVFSTLLALGEPDPSALQLISEDFRILSRVTNAISIQASVIRKDVKIRDVISE 64

Query: 239 FLPLNRRSEDVLATSFASRGLAELLRLHRAQASQEARRELT 361
           FL +  +  + +    +S  + EL R+H+A++      +L+
Sbjct: 65  FLLITPKLLENVVEFDSSSAILELNRMHKARSKMMRNEDLS 105


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,240,860
Number of Sequences: 27780
Number of extensions: 120899
Number of successful extensions: 500
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 500
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 988489374
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)