Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_O17
(470 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05) 30 1.1
SB_8875| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.1
SB_17034| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.5
SB_12036| Best HMM Match : G_glu_transpept (HMM E-Value=0) 29 1.5
SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23) 29 1.9
SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0) 29 1.9
SB_30941| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.9
SB_11347| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.9
SB_24975| Best HMM Match : ET (HMM E-Value=1) 27 5.9
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.9
>SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05)
Length = 1878
Score = 29.9 bits (64), Expect = 1.1
Identities = 25/63 (39%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = -1
Query: 407 LPAAVT-LSPNPGMCVSVRLTPWPFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSLPAK 231
LPAAV + P V+ TP L ATP VA LVK+K P L I K
Sbjct: 256 LPAAVPPIKTKPAAPSPVKATPTVAPLVKATPMVAP-----LVKAKLPQPLRILYICEEK 310
Query: 230 GTL 222
GT+
Sbjct: 311 GTV 313
>SB_8875| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 189
Score = 29.9 bits (64), Expect = 1.1
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +3
Query: 339 RPRSKSHGYTHPRVRRQGDSC 401
RP S+SHG HPRV D+C
Sbjct: 92 RPTSQSHGNRHPRVPIDKDNC 112
>SB_17034| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 29.5 bits (63), Expect = 1.5
Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -1
Query: 242 LPAKGTLTPA-PEVPSELSVRAPCASLRTLELVNSSGSS 129
L AKG L+ P E +RAPC+SL E SSG S
Sbjct: 13 LEAKGRLSERRPSAKCESILRAPCSSLEDKESDESSGLS 51
>SB_12036| Best HMM Match : G_glu_transpept (HMM E-Value=0)
Length = 646
Score = 29.5 bits (63), Expect = 1.5
Identities = 24/95 (25%), Positives = 45/95 (47%)
Frame = +1
Query: 145 LTSSRVRRDAHGALTLNSDGTSGAGVKVPFAGNDKNIVSAIGSLDLTNRQKLGAATAGVA 324
L R +DA + D T ++ F N + V G ++ R + + T ++
Sbjct: 398 LGDPRYMKDADKVVKKMVDQTHSNNLR-KFIDNRTHPVKYYGPINY--RTDVTSGTTHLS 454
Query: 325 LDNVNGHGVSLTDTHIPGFGDKVTAAGKVNLFHND 429
+ + +G+GVSLT + FG K+ + K+ + +ND
Sbjct: 455 VVDADGNGVSLTSSINKYFGSKIRSK-KLGIIYND 488
>SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23)
Length = 1026
Score = 29.1 bits (62), Expect = 1.9
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +3
Query: 342 PRSKSHGYTHPRVRRQGDSC 401
P + SH YTH VR GD+C
Sbjct: 260 PHALSHNYTHLAVRYYGDAC 279
>SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 514
Score = 29.1 bits (62), Expect = 1.9
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +3
Query: 336 KRPRSKSHGYTHPRVRRQGDSC--RQSESLPQRLPRHHRRKLSP 461
+R S+S T PR RR+ S + S S + PRH RR SP
Sbjct: 60 RRSFSRSKSRTPPRHRRRSRSPNKKHSRSKSRTPPRHRRRSRSP 103
>SB_30941| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 330
Score = 29.1 bits (62), Expect = 1.9
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +3
Query: 342 PRSKSHGYTHPRVRRQGDSC 401
P + SH YTH VR GD+C
Sbjct: 260 PHALSHNYTHLAVRYYGDAC 279
>SB_11347| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1234
Score = 29.1 bits (62), Expect = 1.9
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Frame = -1
Query: 407 LPAAVTL-SPNPGMCVSVRLTPWPFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSLPAK 231
LP V+L S PG TP P +L+S TP+ + L K+ P++L+ S P
Sbjct: 1042 LPVPVSLTSKTPGPVSLTSKTPGPVSLTSKTPSPVS----LTSKTPGPVSLSSKTSGPVS 1097
Query: 230 GT-LTPAP 210
T TP P
Sbjct: 1098 LTSKTPGP 1105
>SB_24975| Best HMM Match : ET (HMM E-Value=1)
Length = 316
Score = 27.5 bits (58), Expect = 5.9
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Frame = -1
Query: 446 PVMSW*SLWKRFTLPAAVTLSPNPGMCVSVRLTPWPFTLSSATPAVAAPSFCLLVKSKEP 267
P SW L R + LSP+ + SV +TP LS + A+ S V P
Sbjct: 74 PPSSWIPLKHRVPVTTNTPLSPSASVTASVSVTP-NTPLSPSASVTASVS----VTPNTP 128
Query: 266 IALTIFLSLPAKGTLTP-APEVPS 198
++L+ S+ A ++TP P+ PS
Sbjct: 129 LSLS--ASVTASVSVTPNTPQSPS 150
>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1272
Score = 27.5 bits (58), Expect = 5.9
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +3
Query: 372 PRVRRQGDSCRQSESLPQRLPRHHRRKLSPP 464
P RR+ R+S S P+R PR SPP
Sbjct: 1079 PEDRRRSRGSRRSPSPPKREPRRRSPSASPP 1109
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,000,529
Number of Sequences: 59808
Number of extensions: 304308
Number of successful extensions: 972
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 878
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 969
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 982083920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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