Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_O17
         (470 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l...    35   0.032
At1g13980.1 68414.m01647 pattern formation protein (EMB30) (GNOM...    29   1.6  
At3g27925.1 68416.m03484 DegP protease, putative SP:022609; almo...    29   2.1  
At2g23300.1 68415.m02781 leucine-rich repeat transmembrane prote...    28   2.8  
At2g26890.1 68415.m03226 DNAJ heat shock N-terminal domain-conta...    28   3.7  
At5g18550.1 68418.m02193 zinc finger (CCCH-type) family protein ...    27   4.8  
At1g71320.1 68414.m08232 S locus F-box-related / SLF-related con...    27   4.8  
At1g59910.1 68414.m06749 formin homology 2 domain-containing pro...    27   4.8  
At5g65160.1 68418.m08195 tetratricopeptide repeat (TPR)-containi...    27   6.4  
At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28...    27   6.4  
At3g12350.1 68416.m01540 F-box family protein  ; similar to SKP1...    27   6.4  
At4g37130.1 68417.m05258 hydroxyproline-rich glycoprotein family...    27   8.5  
At2g37690.1 68415.m04622 phosphoribosylaminoimidazole carboxylas...    27   8.5  

>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
           SR protein (SRZ22) identical to RSZp22 protein
           [Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
           SR protein [Arabidopsis thaliana] GI:3435094; contains
           Pfam profiles PF00076: RNA recognition motif. (a.k.a.
           RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
           identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
          Length = 200

 Score = 34.7 bits (76), Expect = 0.032
 Identities = 25/56 (44%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = +3

Query: 300 RRCNRWSGTG*CKRPRSKSHGYTHPRVRRQGDSCRQSESLPQRLPRHHRRKL-SPP 464
           R C    GTG   R RSKS   T PR RR     R+S S   R P   RR+  SPP
Sbjct: 112 RECRNRGGTG---RRRSKSRSRTPPRYRRSPSYGRRSYSPRARSPPPPRRRSPSPP 164


>At1g13980.1 68414.m01647 pattern formation protein (EMB30) (GNOM)
           identical to SP|Q42510; contains Pfam profile PF01369:
           Sec7 domain
          Length = 1451

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 22/63 (34%), Positives = 32/63 (50%)
 Frame = +1

Query: 73  GVQSRYLIVSEPVYYIQHYEEPELLTSSRVRRDAHGALTLNSDGTSGAGVKVPFAGNDKN 252
           GV S Y IVS+PV       E ++  S  +   A GA +L  DG  G G + P +  D +
Sbjct: 249 GVDSDYAIVSKPVEDGNANSEYDVENS--MATFATGAQSLMDDGPVGPGSRKPASPYDLH 306

Query: 253 IVS 261
           I++
Sbjct: 307 IMT 309


>At3g27925.1 68416.m03484 DegP protease, putative SP:022609; almost
           identical to DegP protease precursor GB:AF028842 from
           [Arabidopsis thaliana] (J. Biol. Chem. 273 (12),
           7094-7098 (1998))
          Length = 439

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 23/80 (28%), Positives = 40/80 (50%)
 Frame = -1

Query: 371 MCVSVRLTPWPFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSLPAKGTLTPAPEVPSEL 192
           +C SV L+   F+L +A+PAV + S   +V + + +      ++      TP+    + L
Sbjct: 83  LCTSVALS---FSLFAASPAVESAS-AFVVSTPKKLQTDELATVRLFQENTPSVVYITNL 138

Query: 191 SVRAPCASLRTLELVNSSGS 132
           +VR    +L  LE+   SGS
Sbjct: 139 AVRQDAFTLDVLEVPQGSGS 158


>At2g23300.1 68415.m02781 leucine-rich repeat transmembrane protein
           kinase, putative 
          Length = 773

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = -1

Query: 398 AVTLSPNPGMCVSVRLTPWPFTLSSAT--PAVAAPSFCLLVKS 276
           +++ S NPG+C      P P   S AT  P  + P+   + KS
Sbjct: 268 SISFSGNPGLCGGPTRNPCPIPSSPATVSPPTSTPALAAIPKS 310


>At2g26890.1 68415.m03226 DNAJ heat shock N-terminal domain-containing
            protein contains Pfam profile PF00226: DnaJ domain
          Length = 2554

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -1

Query: 407  LPAAVTLSPNPGMCVSVRLTPWPFTLSSATPAVAAPSFCLLVKSK 273
            L A+  LS   G+C    LTP+  T +    A+  P    L+K +
Sbjct: 1804 LQASQALSRLTGLCADESLTPYNATAADVLKALLTPKLASLLKDE 1848


>At5g18550.1 68418.m02193 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 456

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 13/51 (25%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = -1

Query: 401 AAVTLSPNPGMCVSVRLTPWPFTLSSATPAVAAPSFCLLVKSK--EPIALT 255
           ++++ SP+P     + + P+P +L +  P+ ++     L+ S   EPI  T
Sbjct: 366 SSLSYSPSPSSLTDMPVAPYPSSLGTLAPSSSSDQCTELISSSSIEPITTT 416


>At1g71320.1 68414.m08232 S locus F-box-related / SLF-related
           contains F-box domain Pfam:PF00646; contains TIGRFAM
           TIGR01640: F-box protein interaction domain; similar to
           S locus F-box (SLF)-S2-like protein (GI:13161528)
           [Antirrhinum hispanicum]
          Length = 392

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -1

Query: 371 MCVSVRLTPWPFTLSSATPAVA 306
           M +S     WPFTLS  TPA+A
Sbjct: 144 MKLSPEFMQWPFTLSYLTPAMA 165


>At1g59910.1 68414.m06749 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02128
          Length = 929

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -1

Query: 410 TLPAAVTLSPNPGMCVSVRLTPWPFTLSSATPAVAAPS 297
           +LP    +  N  +  S  LTP  FT ++A PA   P+
Sbjct: 342 SLPPGQYMPGNAALSASTPLTPGQFTTANAPPAPPGPA 379


>At5g65160.1 68418.m08195 tetratricopeptide repeat (TPR)-containing
           protein contains Pfam profile PF00515 TPR Domain
          Length = 593

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +1

Query: 277 DLTNRQKLGAATAGVALDNVNGHGVSLT 360
           +L N  + G  TAGV   N NG+GV  T
Sbjct: 180 NLGNLNQTGPVTAGVNYGNNNGYGVKRT 207


>At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28)
           nearly identical to SC35-like splicing factor SCL28, 28
           kD [Arabidopsis thaliana] GI:9843655; contains Pfam
           profile PF00076: RNA recognition motif. (a.k.a. RRM,
           RBD, or RNP domain)
          Length = 236

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = +3

Query: 384 RQGDSCRQSESLPQRLPRHHRRKLSPP 464
           R GD  R S   P+R  R H R  SPP
Sbjct: 142 RHGDYKRTSHRSPRRRYRSHSRSRSPP 168


>At3g12350.1 68416.m01540 F-box family protein  ; similar to SKP1
           interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
          Length = 422

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 18/57 (31%), Positives = 31/57 (54%)
 Frame = -2

Query: 172 RPCGL*SLSIVQAPHSVEYSKQVR*QSGIGFERRRTERQAIKRRSSRTCLCTERQLK 2
           R  G  S  ++ +P+  E   Q+  ++  G +RRR +R+  +R++SRT    E  LK
Sbjct: 204 RSSGDESDDLISSPNFSEMYTQLANKTSPGGDRRRQKRKEKERQASRTKWEPEHFLK 260


>At4g37130.1 68417.m05258 hydroxyproline-rich glycoprotein family
           protein
          Length = 513

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 26/83 (31%), Positives = 34/83 (40%), Gaps = 11/83 (13%)
 Frame = -1

Query: 392 TLSPNPGMCVSVRLTPWPFTLSS--ATPAVAAPSFCLLVKSKEPIALTIFLSLPAK---- 231
           T +P+ G   S   TP     SS  ATP+  AP+  L   S  P    +F S PA     
Sbjct: 409 TSNPSSGAGFSFLNTPASGPSSSLFATPSSTAPTSSLFGPSPTPTQTPLFGSSPASTFGS 468

Query: 230 -----GTLTPAPEVPSELSVRAP 177
                G  TP+  +PS+     P
Sbjct: 469 TQSLFGQTTPSLTMPSQFGGATP 491


>At2g37690.1 68415.m04622 phosphoribosylaminoimidazole carboxylase,
           putative / AIR carboxylase, putative similar to
           SP|P55195 Phosphoribosylaminoimidazole carboxylase,
           chloroplast precursor (EC 4.1.1.21) (AIR carboxylase)
           (AIRC) {Vigna aconitifolia}; contains Pfam profiles
           PF02222: ATP-grasp domain, PF00731: AIR carboxylase
          Length = 642

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -3

Query: 426 VVEEIHFAGSCHLVSEPGDV 367
           VVE IH    CH+V  P DV
Sbjct: 293 VVETIHRDNICHIVKAPADV 312


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,182,005
Number of Sequences: 28952
Number of extensions: 201976
Number of successful extensions: 676
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 801831960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)