Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_O16
         (582 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0663 + 5721902-5723176,5724162-5724233,5724405-5724560,572...    28   4.7  
02_04_0256 + 21331396-21332268                                         28   6.2  
01_07_0192 - 41888998-41890632                                         28   6.2  
01_06_1097 + 34507376-34507395,34509380-34511214,34511263-345115...    28   6.2  
12_02_1094 + 26032135-26032164,26032975-26033152,26033234-260340...    27   8.2  
07_01_0646 + 4853546-4853623,4853732-4855357,4855467-4855751,485...    27   8.2  

>08_01_0663 +
           5721902-5723176,5724162-5724233,5724405-5724560,
           5724655-5724844,5725173-5725255
          Length = 591

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -1

Query: 456 EHVVHSGTDSVEVRNLRNIWHVFSGECFGTEIVVVVME 343
           E + HSG  + +V  L N W+++    F  + VV+V E
Sbjct: 418 ELLAHSGEVNKQVPRLSNFWNMYFTHHFQVDTVVMVRE 455


>02_04_0256 + 21331396-21332268
          Length = 290

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 17/40 (42%), Positives = 22/40 (55%)
 Frame = -1

Query: 144 HSTGGTIRVDSESTRLPAHPRVSPLLRLILILFDVVTRLF 25
           HS    I + S + RL AHP   P +RLIL+  D +  LF
Sbjct: 129 HSPSDLISLLSRAQRLLAHPGRLPPVRLILV--DSIASLF 166


>01_07_0192 - 41888998-41890632
          Length = 544

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
 Frame = -1

Query: 483 GRRCTNFIFEHVVHSGTDSVEVRNLRN-IWHVFSGECFGTEIVVVVMEEIYFTGSRHFVT 307
           G  C  F  E  +  G + V V   R  ++H     C G E+  V M+ +     R F  
Sbjct: 441 GEDCREFRPERWLSDGGEFVAVDAARYPVFHAGPRACLGREMAYVQMKAVAAAVIRRFAV 500

Query: 306 EP 301
           EP
Sbjct: 501 EP 502


>01_06_1097 + 34507376-34507395,34509380-34511214,34511263-34511598,
            34511800-34513691
          Length = 1360

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 32/148 (21%), Positives = 60/148 (40%)
 Frame = +1

Query: 100  AGALTINSDGTSGAMVKVPITGNENHKLSALGSVDLTNQMKLGAATAGLAYDNVNGHGAT 279
            A    ++SD  +  +   P+  N   + S L  +D     ++ A  +     +V+ H   
Sbjct: 931  AAGYPLDSDDDADKIYPEPMEDNVIDE-SFLSELDAVGDFRVEATRSDQQMPDVDSHIDN 989

Query: 280  LTKTHIPGFGDKMTAAGKVNLFHNNNHDFSAKAFATKNMPNIPQVPNFNTVGAGVDYMFK 459
             T   +      ++     N+F N  +     A   ++  N P V + N  G G ++ + 
Sbjct: 990  NTSNGVAE-SSLISPQISSNIFSNMKY-----ASMLEHEENSPLVDDLN--GTGPEFGWS 1041

Query: 460  DKIGASATAAHTDVFNPQRLLSGAGKLE 543
              +GAS       V+NP+R + GA + E
Sbjct: 1042 --LGASYDDPEQTVYNPRRRILGASRFE 1067


>12_02_1094 +
           26032135-26032164,26032975-26033152,26033234-26034017,
           26034135-26034216,26034968-26035177
          Length = 427

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +2

Query: 395 CQIFLKFRTSTLSVPEWTTCSKIK 466
           C++ L+F+   + + EW +C K K
Sbjct: 326 CKLALRFQRKEVKIQEWESCQKAK 349


>07_01_0646 +
           4853546-4853623,4853732-4855357,4855467-4855751,
           4856131-4856277
          Length = 711

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 18/58 (31%), Positives = 26/58 (44%)
 Frame = +1

Query: 100 AGALTINSDGTSGAMVKVPITGNENHKLSALGSVDLTNQMKLGAATAGLAYDNVNGHG 273
           AG  + +     G  V   + G +NH +S +G          GA TAG AY+ +N  G
Sbjct: 178 AGHSSTSISAALGMAVARDLLGKKNHVISVIGD---------GAMTAGQAYEAMNNSG 226


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.314    0.130    0.378 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,396,859
Number of Sequences: 37544
Number of extensions: 386299
Number of successful extensions: 663
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 663
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)