Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_O15
         (228 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit S5|S...    24   3.1  
SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomy...    23   4.1  
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual     23   7.2  

>SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit
           S5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -2

Query: 197 HLRFHQN*L*VHPLAGAPWNWSTAP 123
           HL F++N +  HPLA      STAP
Sbjct: 115 HLPFYENYIRNHPLAIEALQKSTAP 139


>SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 505

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +2

Query: 20  VAKLFLVSVLLVGVNSRY 73
           V  L+++SVL+VG+N  Y
Sbjct: 266 VLLLYIISVLVVGINLPY 283


>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 815

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3

Query: 24  PSYSSCLFS*SALIAGTCWLKSL 92
           PS+   LFS S LIAG   +K L
Sbjct: 509 PSWGKYLFSISDLIAGWLMIKLL 531


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 753,512
Number of Sequences: 5004
Number of extensions: 8831
Number of successful extensions: 14
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 2,362,478
effective HSP length: 55
effective length of database: 2,087,258
effective search space used: 41745160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)