Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_O15
         (228 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35820| Best HMM Match : TRAP_240kDa (HMM E-Value=0.006)             25   9.7  
SB_2424| Best HMM Match : RVT_1 (HMM E-Value=6.2e-18)                  25   9.7  
SB_50448| Best HMM Match : RVT_1 (HMM E-Value=3.7)                     25   9.7  

>SB_35820| Best HMM Match : TRAP_240kDa (HMM E-Value=0.006)
          Length = 1382

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +2

Query: 134  TSSRVRRQAGELTINSDGTSGAMVKVPITG 223
            T + VRR +    I ++G+S +    P+TG
Sbjct: 1116 TMAVVRRPSSHREIKTEGSSSSTASAPVTG 1145


>SB_2424| Best HMM Match : RVT_1 (HMM E-Value=6.2e-18)
          Length = 657

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 149 APWNWSTAPAVPRTVRCSI 93
           AP  W+  PA  RT+ CSI
Sbjct: 621 APTLWNALPANLRTINCSI 639


>SB_50448| Best HMM Match : RVT_1 (HMM E-Value=3.7)
          Length = 390

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 149 APWNWSTAPAVPRTVRCSI 93
           AP  W+  PA  RT+ CSI
Sbjct: 354 APTLWNALPANLRTINCSI 372


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,812,301
Number of Sequences: 59808
Number of extensions: 74612
Number of successful extensions: 176
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 16,821,457
effective HSP length: 53
effective length of database: 13,651,633
effective search space used: 300335926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)