Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_O15
         (228 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK128833-1|BAC87633.1|  286|Homo sapiens protein ( Homo sapiens ...    27   8.1  

>AK128833-1|BAC87633.1|  286|Homo sapiens protein ( Homo sapiens
           cDNA FLJ46328 fis, clone TESTI4044291. ).
          Length = 286

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -2

Query: 161 PLAGAPWNWSTAPAVPR 111
           P+ G PW W  +PAV R
Sbjct: 22  PVPGRPWPWRASPAVQR 38


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,309,471
Number of Sequences: 237096
Number of extensions: 420694
Number of successful extensions: 493
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 493
length of database: 76,859,062
effective HSP length: 54
effective length of database: 64,055,878
effective search space used: 1345173438
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)