Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_O14
         (604 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39468| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.41 
SB_15021| Best HMM Match : Zona_pellucida (HMM E-Value=0)              31   0.95 
SB_48089| Best HMM Match : DUF638 (HMM E-Value=3.3)                    30   1.3  
SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23)                  29   2.9  
SB_54333| Best HMM Match : Glyco_hydro_39 (HMM E-Value=0)              28   5.1  
SB_26853| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.1  
SB_34654| Best HMM Match : zf-C2H2 (HMM E-Value=8e-31)                 28   6.7  
SB_46909| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.00039)          28   6.7  
SB_33008| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  

>SB_39468| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1778

 Score = 31.9 bits (69), Expect = 0.41
 Identities = 27/97 (27%), Positives = 41/97 (42%), Gaps = 2/97 (2%)
 Frame = +3

Query: 102 EDQPEQWANSRVRRQAGALTINSDGTSGAMVKVPITGNENHKLSALGSVDLTNQMKLGAA 281
           +++P       V+ +    TIN    +   +K  + GN +  L A  S    N  K G  
Sbjct: 651 DNEPVTETIDSVKEEDSKATINCIRNNNTYIKQSVEGNNSFSLDASSS---ENVRKEGDK 707

Query: 282 TAGLAY-DNVNGHGATLT-KTHIPGFGDKMTAAGKVN 386
              ++Y DN+N   A  T +  IPG   K  +  KVN
Sbjct: 708 DVVISYSDNMNNSKAANTDQFGIPGSDSKTGSDSKVN 744


>SB_15021| Best HMM Match : Zona_pellucida (HMM E-Value=0)
          Length = 751

 Score = 30.7 bits (66), Expect = 0.95
 Identities = 20/58 (34%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
 Frame = +3

Query: 318 GATLTKTHIPGFGDKMTAAGKVNLFHNNNHDFSAKAFATKNMPNIPQ-VPNFNTVGAG 488
           G+T   T IPG G    + GK ++  N  H  S  A         P  VP   T GAG
Sbjct: 322 GSTTKTTKIPGPGKIHISTGKPSITDNTKHKTSPSADGKGGKGEEPTIVPEMTTQGAG 379


>SB_48089| Best HMM Match : DUF638 (HMM E-Value=3.3)
          Length = 811

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
 Frame = -3

Query: 179 GTIRVDSESTRL---PAHPRVSPLLRLILILFD---VVTRLFNKHVTAV 51
           G + V+ +  RL     HPR SPLL+L+    D   VV  LF +HV AV
Sbjct: 614 GKVAVEEKRPRLLRSEFHPRRSPLLQLLSNTPDVHVVVVELFQRHVHAV 662


>SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23)
          Length = 2123

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +1

Query: 472  TLSVPEWTTCSKIKLVHLRPPHTPXSLTATTTLWAE 579
            TLS  + T+ S     ++ PPH+P + T TTT   E
Sbjct: 1748 TLSTLKTTSTSTSTTKYIPPPHSPPTTTTTTTTTPE 1783


>SB_54333| Best HMM Match : Glyco_hydro_39 (HMM E-Value=0)
          Length = 1325

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = -3

Query: 206  YGYLDHSTGGTIRVDSESTRLPAHPRVSPL 117
            Y YL H T  T + DS STR+    RV  L
Sbjct: 935  YAYLHHDTRTTCKYDSYSTRIYTATRVRQL 964


>SB_26853| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 771

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 20/61 (32%), Positives = 26/61 (42%)
 Frame = +3

Query: 297 YDNVNGHGATLTKTHIPGFGDKMTAAGKVNLFHNNNHDFSAKAFATKNMPNIPQVPNFNT 476
           Y   NGH   L ++  P      T    V  F  NN+DFS++  A  N PN+     F  
Sbjct: 273 YTPTNGH-FQLDESVFPNSDSPDTRDQTVESFEINNNDFSSQENAQSN-PNLDNNDRFRP 330

Query: 477 V 479
           V
Sbjct: 331 V 331


>SB_34654| Best HMM Match : zf-C2H2 (HMM E-Value=8e-31)
          Length = 624

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 2/96 (2%)
 Frame = +3

Query: 72  EEPGYYIEQYE--DQPEQWANSRVRRQAGALTINSDGTSGAMVKVPITGNENHKLSALGS 245
           E   Y  E+YE  D     AN     QA +   N+  ++G ++ + ++G  + K+ A  S
Sbjct: 113 ERSEYGGERYETSDFQRSVANRYKELQADSWKKNNVTSAGGLLSLDLSGEGHFKVHANAS 172

Query: 246 VDLTNQMKLGAATAGLAYDNVNGHGATLTKTHIPGF 353
             +            + Y  +    A L   HIPGF
Sbjct: 173 TAIPAAETTDWPQENI-YSTIQYQEAPLPPAHIPGF 207


>SB_46909| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.00039)
          Length = 685

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -1

Query: 262 WLVRSTEPRALSLWFSLPVMGTLTIAPEVPSELIV 158
           W+V ++EP  LS    + ++ T +I P  P   I+
Sbjct: 472 WVVETSEPLQLSTTIMISIITTTSILPSFPPTAII 506


>SB_33008| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1016

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -3

Query: 248 D*TKSTELVVFIASYGYLDHSTGGTIRVDSES 153
           D +K+ E +  IA++  L+H+  G I  DSES
Sbjct: 800 DLSKALEDIKNIAAFNVLEHAKSGEIESDSES 831


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,683,985
Number of Sequences: 59808
Number of extensions: 393774
Number of successful extensions: 847
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 847
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1463691625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)