Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_O14
         (604 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g43990.2 68418.m05382 SET domain-containing protein identical...    28   5.5  
At5g43990.1 68418.m05383 SET domain-containing protein identical...    28   5.5  
At3g42940.1 68416.m04509 expressed protein                             27   7.2  
At1g76070.1 68414.m08834 expressed protein                             27   7.2  
At1g55860.1 68414.m06406 ubiquitin-protein ligase 1 (UPL1) nearl...    27   7.2  
At5g64360.3 68418.m08085 DNAJ heat shock N-terminal domain-conta...    27   9.6  
At5g64360.2 68418.m08084 DNAJ heat shock N-terminal domain-conta...    27   9.6  
At5g64360.1 68418.m08083 DNAJ heat shock N-terminal domain-conta...    27   9.6  
At3g57030.1 68416.m06348 strictosidine synthase family protein s...    27   9.6  
At3g44820.1 68416.m04829 phototropic-responsive NPH3 family prot...    27   9.6  

>At5g43990.2 68418.m05382 SET domain-containing protein identical to
           SET domain protein SUVR2 [Arabidopsis thaliana]
           GI:15290521; contains Pfam profiles PF00856: SET domain,
           PF05033: Pre-SET motif; identical to cDNA SET domain
           protein SUVR2 GI:15290520
          Length = 740

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 18/76 (23%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
 Frame = +3

Query: 123 ANSRVRRQAGALTINSDGTSGAMVKVPITGNENHKLSALGSVDLTNQMKLGAATAGLAYD 302
           +N  V  +AG     +DGT+  +    +    +HKL+A  +++    ++L ++ +G    
Sbjct: 219 SNGHVEEKAGETVSTADGTTNDISPTTVARFSDHKLAA--TIEEPPALELASSASGEVKI 276

Query: 303 NVNGHGAT-LTKTHIP 347
           N++   AT  +  H+P
Sbjct: 277 NLSFAPATGGSNPHLP 292


>At5g43990.1 68418.m05383 SET domain-containing protein identical to
           SET domain protein SUVR2 [Arabidopsis thaliana]
           GI:15290521; contains Pfam profiles PF00856: SET domain,
           PF05033: Pre-SET motif; identical to cDNA SET domain
           protein SUVR2 GI:15290520
          Length = 717

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 18/76 (23%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
 Frame = +3

Query: 123 ANSRVRRQAGALTINSDGTSGAMVKVPITGNENHKLSALGSVDLTNQMKLGAATAGLAYD 302
           +N  V  +AG     +DGT+  +    +    +HKL+A  +++    ++L ++ +G    
Sbjct: 196 SNGHVEEKAGETVSTADGTTNDISPTTVARFSDHKLAA--TIEEPPALELASSASGEVKI 253

Query: 303 NVNGHGAT-LTKTHIP 347
           N++   AT  +  H+P
Sbjct: 254 NLSFAPATGGSNPHLP 269


>At3g42940.1 68416.m04509 expressed protein
          Length = 193

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = -3

Query: 512 LIFEHVVHSGTDSVEVRNLRNIWHVFSGEC 423
           +  E ++ SG D  ++  + N WH+F   C
Sbjct: 157 ICLEDMLESGFDDKQIYRMHNCWHMFYEGC 186


>At1g76070.1 68414.m08834 expressed protein
          Length = 272

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +3

Query: 384 NLFHNNNHDFSAKAFATKNMPNIPQVPN 467
           +L HNN+H+++A      + P +P VPN
Sbjct: 40  DLHHNNHHNYTAANKMFFSGPMVPLVPN 67


>At1g55860.1 68414.m06406 ubiquitin-protein ligase 1 (UPL1) nearly
            identical to ubiquitin-protein ligase 1 [Arabidopsis
            thaliana] GI:7108521; E3, HECT-domain protein family;
            similar to GI:7108521, GB:AAF36454 from [Arabidopsis
            thaliana]
          Length = 3891

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = +1

Query: 70   LKSLVTTSNSMRISRSSGLTRGCAGKRVLSLSTLMVPPV 186
            ++ L T S+  ++SRS+G   G +  RVL + + +  P+
Sbjct: 3298 VRELATLSSKQKMSRSTGSMAGASILRVLQVLSSLTSPI 3336


>At5g64360.3 68418.m08085 DNAJ heat shock N-terminal
           domain-containing protein low similarity to AHM1
           [Triticum aestivum] GI:6691467; contains Pfam profile
           PF00226 DnaJ domain
          Length = 464

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = -1

Query: 250 STEPRALSLWFSLPVMGTLTIAPEVPSELIVRAPACRRTLE 128
           S +P A S W + P    L   P+   E  ++   CRR  +
Sbjct: 187 SADPMATSFWTACPYCFVLFEYPKAYEECTLKCQECRRAFQ 227


>At5g64360.2 68418.m08084 DNAJ heat shock N-terminal
           domain-containing protein low similarity to AHM1
           [Triticum aestivum] GI:6691467; contains Pfam profile
           PF00226 DnaJ domain
          Length = 464

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = -1

Query: 250 STEPRALSLWFSLPVMGTLTIAPEVPSELIVRAPACRRTLE 128
           S +P A S W + P    L   P+   E  ++   CRR  +
Sbjct: 187 SADPMATSFWTACPYCFVLFEYPKAYEECTLKCQECRRAFQ 227


>At5g64360.1 68418.m08083 DNAJ heat shock N-terminal
           domain-containing protein low similarity to AHM1
           [Triticum aestivum] GI:6691467; contains Pfam profile
           PF00226 DnaJ domain
          Length = 422

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = -1

Query: 250 STEPRALSLWFSLPVMGTLTIAPEVPSELIVRAPACRRTLE 128
           S +P A S W + P    L   P+   E  ++   CRR  +
Sbjct: 187 SADPMATSFWTACPYCFVLFEYPKAYEECTLKCQECRRAFQ 227


>At3g57030.1 68416.m06348 strictosidine synthase family protein
           similar to strictosidine synthase [Rauvolfia
           serpentina][SP|P15324]
          Length = 374

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 271 NFIWLVRSTEPRALSLWFSLPVMGTLTIAPEVP 173
           +F+ +V +T  + L LW S P  GT  +  E+P
Sbjct: 231 SFVLVVETTTCKILRLWLSGPNAGTHQVFAELP 263


>At3g44820.1 68416.m04829 phototropic-responsive NPH3 family protein
           contains NPH3 family domain, Pfam:PF03000
          Length = 661

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
 Frame = +3

Query: 243 SVDLTNQMKLGAATAGLAYDNVNGHGATLTKTHIPGFGDKMTAAGKVNLFHNNNHDFS-A 419
           SVDL  ++     T G+  +++ G      + ++PG G   +     +        F+ A
Sbjct: 264 SVDLFKRLIKTMETKGIRAESLAGAMMYYARKYLPGLGRWQSGTSDSSKSRRRVVSFNLA 323

Query: 420 KAFATKNMPNIPQVPNFNTV 479
           KA +  +MP + Q+    T+
Sbjct: 324 KASSPSSMPPLDQIALLETI 343


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,876,827
Number of Sequences: 28952
Number of extensions: 269599
Number of successful extensions: 648
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 648
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1197101088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)