Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_O13
         (650 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38707| Best HMM Match : p450 (HMM E-Value=9.3e-13)                  30   1.9  
SB_45675| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_25256| Best HMM Match : G-patch (HMM E-Value=3.7)                   28   7.6  

>SB_38707| Best HMM Match : p450 (HMM E-Value=9.3e-13)
          Length = 435

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/42 (38%), Positives = 25/42 (59%)
 Frame = +3

Query: 297 SKRNVVDYAYKLVRKGEIGIVRDYFPIHFRWILLGEQVKFIN 422
           S R+ +  A K  + G+ G+V+DY  + F   +LGE + FIN
Sbjct: 64  SPRSRISRAGKQPQTGKAGLVKDYGDV-FTLRILGESIVFIN 104


>SB_45675| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 217

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
 Frame = -1

Query: 593 LSELLVHNFKVRPLVPPMRD----YFPRHSITLPFVFVTVRT 480
           + EL +H + VR  V P RD    Y+P  S T+   FV +RT
Sbjct: 139 ICELFLHEWNVR--VGPRRDASTVYYPCSSATMDSCFVLIRT 178


>SB_25256| Best HMM Match : G-patch (HMM E-Value=3.7)
          Length = 389

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 10/42 (23%), Positives = 23/42 (54%)
 Frame = -3

Query: 600 SNIVRIACSQFQSTPSGSTNEGLFSKTFYHSPIRFCHRTHLY 475
           ++++   C+++ +   G+TN   +  T +H  +R+ HR   Y
Sbjct: 157 TSVLSRRCAEWGNLCDGATNCDQWGNTDFHGALRYLHRVGYY 198


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,906,253
Number of Sequences: 59808
Number of extensions: 370999
Number of successful extensions: 887
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 887
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)