Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_O12
         (548 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27983| Best HMM Match : PAN (HMM E-Value=0.0022)                    33   0.15 
SB_19356| Best HMM Match : Cucumo_2B (HMM E-Value=7.3)                 31   0.82 
SB_15136| Best HMM Match : Peptidase_S13 (HMM E-Value=0.27)            29   3.3  
SB_22546| Best HMM Match : ABC_tran (HMM E-Value=0)                    27   7.6  

>SB_27983| Best HMM Match : PAN (HMM E-Value=0.0022)
          Length = 616

 Score = 33.1 bits (72), Expect = 0.15
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -3

Query: 543 ETALYTLCFMARPDRPCKLRYNNIAFTIQTK 451
           E +LYT CF  RP + C  R N+    I+TK
Sbjct: 104 EFSLYTACFYLRPGQECTCRINSQTIKIRTK 134


>SB_19356| Best HMM Match : Cucumo_2B (HMM E-Value=7.3)
          Length = 194

 Score = 30.7 bits (66), Expect = 0.82
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -3

Query: 543 ETALYTLCFMARPDRPCKLRYNNIAFTIQTKTLKSDNVLLIDTAYP 406
           E +LYT CF+  P+  C  + N     ++  T +     L+ TAYP
Sbjct: 149 ELSLYTTCFLKYPNGKCTCQMN--GKKVKIVTYRDRRTSLVATAYP 192


>SB_15136| Best HMM Match : Peptidase_S13 (HMM E-Value=0.27)
          Length = 638

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 14/54 (25%), Positives = 29/54 (53%)
 Frame = +2

Query: 386 LVDA*KNGYAVSISRTLSDLSVFVCMVKAMXXXXXXXXXXXXAIKHSVYRAVSN 547
           ++ A  NG  VSI+  L+ +++   +++AM            A+K ++ RA++N
Sbjct: 223 IIRAMANGSIVSIAGILAIVAIKTTIIRAMANGSIVAIAGILAVKTTIIRAMAN 276


>SB_22546| Best HMM Match : ABC_tran (HMM E-Value=0)
          Length = 844

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 12/35 (34%), Positives = 23/35 (65%)
 Frame = +3

Query: 66  FYLL*FRLYNIM*FFKVILNSIRSVNSGILFLVFF 170
           F L+ F  Y++  ++  +L + +++NSG L +VFF
Sbjct: 27  FQLIMFGSYSLAFWYGAVLVADKAINSGDLLVVFF 61


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,698,460
Number of Sequences: 59808
Number of extensions: 223176
Number of successful extensions: 262
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 262
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)