Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_O12
         (548 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75544-4|CAA99880.1|  307|Caenorhabditis elegans Hypothetical pr...    31   0.41 
AF026203-1|AAB71246.2|  506|Caenorhabditis elegans Hypothetical ...    27   8.9  

>Z75544-4|CAA99880.1|  307|Caenorhabditis elegans Hypothetical
           protein K02A11.3 protein.
          Length = 307

 Score = 31.5 bits (68), Expect = 0.41
 Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = -3

Query: 543 ETALYTLCFMARPDR-PCKLRYNNIAFTIQTKTLKSDNVLLIDTAYP 406
           + ALYT+CF++R  R  C + ++     I +  +   N + I + YP
Sbjct: 245 DMALYTMCFLSRRGRETCDVEFDGCPLQITSFEIMQQNKVYIGSIYP 291


>AF026203-1|AAB71246.2|  506|Caenorhabditis elegans Hypothetical
           protein E03E2.1 protein.
          Length = 506

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
 Frame = +1

Query: 280 HTNIGYK*R*NVNN----CVTFKNDYYSKLLFFF*EYYNVSRRLKK 405
           H    ++ R NV+N    C T +ND+YS L FFF E++N  + ++K
Sbjct: 237 HLISNFQSRKNVDNNNGICCT-ENDHYSLLGFFF-EHHNEKKLIEK 280


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,017,406
Number of Sequences: 27780
Number of extensions: 189241
Number of successful extensions: 275
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 272
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 275
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)