Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_O11
(341 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces... 62 2e-11
SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha... 27 0.60
SPCC16C4.18c |taf50||histone H4-like TAF |Schizosaccharomyces po... 27 0.60
SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3 |Schizosacc... 26 1.4
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc... 26 1.8
SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyc... 24 5.6
SPAC144.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 24 7.5
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S... 24 7.5
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 24 7.5
SPBC16A3.02c |||mitochondrial peptidase |Schizosaccharomyces pom... 24 7.5
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 23 9.8
>SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 199
Score = 62.1 bits (144), Expect = 2e-11
Identities = 29/57 (50%), Positives = 34/57 (59%)
Frame = +2
Query: 170 IFSLYYLLNGKGEQISFGWFLENTSPYMWGTLGIAFSVALSVVGACMGIHTTGVSIV 340
I LY L + GE FG FL +TSPY WG LGIA VA ++GA GI G SI+
Sbjct: 17 IVGLYMLFHNSGESFDFGSFLLDTSPYTWGLLGIASCVAFGIIGAAWGIFICGTSIL 73
>SPBC609.03 |||WD repeat protein, human IQWD1
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 27.5 bits (58), Expect = 0.60
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -2
Query: 319 VNTHASSYHGQCDGES 272
VNTH SY+G C+ ES
Sbjct: 657 VNTHVKSYYGHCNVES 672
>SPCC16C4.18c |taf50||histone H4-like TAF |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 452
Score = 27.5 bits (58), Expect = 0.60
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +2
Query: 122 YFLSYLFVLLVGLTIPIF-SLYYLLNGKGEQISFGWFLENTSPY 250
Y L L L+G+ F ++YY L + + + FL+NT PY
Sbjct: 302 YALRDLAAFLLGIVCDRFGNVYYTLKPRVTRTALKAFLDNTKPY 345
>SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 878
Score = 26.2 bits (55), Expect = 1.4
Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
Frame = +2
Query: 89 PICSKKYLKMRYFLSYLFVLLVGL--TIPIFSLYYLLNGKGEQISFGWFLENTSPYMWGT 262
P+ K++K F SY F G L + LN K ++ + S + WG
Sbjct: 753 PVLLSKFMKPTIFDSYDFFNHWGQMGVEREAQLTFGLNSKDRKLDAKRLTKIVSGFHWGI 812
Query: 263 LGIAFSVALSVVGA 304
S+AL++VGA
Sbjct: 813 CQNVDSIALNIVGA 826
>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1679
Score = 25.8 bits (54), Expect = 1.8
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = -1
Query: 341 RLCLHQLCEYPCKLLPRTVRRRKRCLTSPTCKGTYFPGTIQSLSA 207
++CL+ + EYP LL T+R + + PT T I SLS+
Sbjct: 112 QICLNHVNEYPLVLLTLTIRLLR--FSKPTSAITCSNDVILSLSS 154
>SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 618
Score = 24.2 bits (50), Expect = 5.6
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -1
Query: 86 LIYPLIPKGTVFFRPIFALT 27
+IYPL+ K + F+PI +T
Sbjct: 415 IIYPLLRKYNIPFKPILRIT 434
>SPAC144.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 112
Score = 23.8 bits (49), Expect = 7.5
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3
Query: 36 KNWAKKDRPFRDKRVNQLQ 92
K AKK+RPF K++ Q Q
Sbjct: 31 KRLAKKERPFEPKKLVQQQ 49
>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 362
Score = 23.8 bits (49), Expect = 7.5
Identities = 7/12 (58%), Positives = 10/12 (83%)
Frame = -3
Query: 105 FFEQIGADLPAY 70
FFE++G D+P Y
Sbjct: 105 FFERVGGDIPVY 116
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 23.8 bits (49), Expect = 7.5
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +2
Query: 80 KSAPICSKKYLKMRYFLSYL 139
K A ICS YLK R L+ L
Sbjct: 183 KKAKICSAYYLKTRLLLAVL 202
>SPBC16A3.02c |||mitochondrial peptidase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 347
Score = 23.8 bits (49), Expect = 7.5
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +1
Query: 64 FGISG*ISSNLLKKISQDEILPKLPVRALGGSHHSYFFTVL 186
FGI G I+ + + + P R LGGS HSY+ +L
Sbjct: 258 FGIGGDITLSYVGSRLSRTLRP----RVLGGSSHSYYNILL 294
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 23.4 bits (48), Expect = 9.8
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = -3
Query: 312 PMQAPTTDSATEKAMPNVPH 253
P+ P T SA A PN PH
Sbjct: 23 PLTIPHTVSAEGLATPNTPH 42
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,515,643
Number of Sequences: 5004
Number of extensions: 29902
Number of successful extensions: 75
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 100068878
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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