Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_O11
(341 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0664 + 24122958-24123070,24123184-24123261,24125040-241252... 39 0.001
12_02_0364 - 18020249-18020737,18021075-18021502,18021563-180216... 38 0.002
06_01_1022 + 7992901-7994676 29 1.3
01_06_0699 - 31313967-31315106 28 1.7
11_04_0359 + 16735204-16735676,16736597-16736647,16736860-167369... 28 2.2
04_04_0819 - 28312667-28313219,28315157-28316430 28 2.2
08_02_1240 + 25504789-25504794,25505421-25505555,25505854-255059... 27 3.9
04_01_0540 - 6993470-6993763,6993963-6994389,6995193-6995371 27 3.9
03_02_0884 + 12160453-12160518,12160598-12160696,12163223-121633... 27 3.9
08_01_0049 - 346200-347213 27 5.1
04_01_0551 - 7119130-7119464,7119601-7119985,7121010-7121690 27 5.1
03_06_0522 - 34494989-34495045,34495171-34495234,34495378-344954... 27 5.1
05_05_0064 + 22063951-22064462,22066344-22066566 26 6.7
03_01_0412 - 3177251-3177302,3177663-3177732,3177947-3178355 26 6.7
03_05_0428 + 24152409-24152783,24152885-24153139,24153204-24153917 26 8.9
03_03_0023 + 13839421-13840326 26 8.9
>01_05_0664 +
24122958-24123070,24123184-24123261,24125040-24125210,
24125288-24125456
Length = 176
Score = 38.7 bits (86), Expect = 0.001
Identities = 17/37 (45%), Positives = 24/37 (64%)
Frame = +2
Query: 230 LENTSPYMWGTLGIAFSVALSVVGACMGIHTTGVSIV 340
L SPY + +GIA S+ +SV+GA GI TG S++
Sbjct: 12 LVQISPYTFSAIGIAVSIGVSVLGAAWGIFITGSSLI 48
>12_02_0364 -
18020249-18020737,18021075-18021502,18021563-18021649,
18022059-18022192,18023051-18023053,18023129-18023187,
18023429-18023887
Length = 552
Score = 37.9 bits (84), Expect = 0.002
Identities = 27/63 (42%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Frame = +2
Query: 125 FLSYLFVLLVGLTIPIFSLY----YLLNGKGEQISFGWFLENTSPYMWGTLGIAFSVALS 292
FLS L LL GLT+P+ Y ++ K E+ S GW+L + G LG AFS+AL
Sbjct: 476 FLSSLAGLLGGLTLPVTFAYPCFMWICIKKPERFSSGWYLN----WGLGLLGTAFSLALC 531
Query: 293 VVG 301
V G
Sbjct: 532 VGG 534
>06_01_1022 + 7992901-7994676
Length = 591
Score = 28.7 bits (61), Expect = 1.3
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +2
Query: 92 ICSKKYLKMRYFLSYLFVLLVGLTIPIFSLYYLLNGK 202
I ++ + MRY F L V TIP+ +Y L+ GK
Sbjct: 95 ITDRRKITMRYLKRPCFALDVASTIPLQIIYQLVTGK 131
>01_06_0699 - 31313967-31315106
Length = 379
Score = 28.3 bits (60), Expect = 1.7
Identities = 17/41 (41%), Positives = 21/41 (51%)
Frame = +1
Query: 124 LPKLPVRALGGSHHSYFFTVLLAKRKG*ADKLWMVPGKYVP 246
L LPV ALG S YF + L A+ K A L + G + P
Sbjct: 195 LADLPVAALGASSGGYFVSRLAAEMKLAAVVLMIAEGSFGP 235
>11_04_0359 +
16735204-16735676,16736597-16736647,16736860-16736934,
16737011-16737062,16737147-16737280,16737397-16737511,
16737665-16737751,16737855-16737903,16738351-16738435,
16738641-16738715,16738848-16739029,16739905-16739969
Length = 480
Score = 27.9 bits (59), Expect = 2.2
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +2
Query: 152 VGLTIPIFSLYYLLNGKGEQISFGWFLENTSPYMWGTLGIAFSVALSVVG 301
VG+ Y+L + E+I+FGW +NT L + A++ VG
Sbjct: 253 VGIVFQFPERYFLADTVLEEITFGWPRQNTDFLFREKLALKLQNAINSVG 302
>04_04_0819 - 28312667-28313219,28315157-28316430
Length = 608
Score = 27.9 bits (59), Expect = 2.2
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 8/90 (8%)
Frame = +2
Query: 92 ICSKKYLKMRYFLSYLFVLLVGLT---IPIFSLYYLLNGKGEQISFGWFLENTSPYMW-- 256
+C K+Y ++L +L V++VGL +P F+ + L G + G+ L
Sbjct: 330 LCRKRYA---WWLRWLLVMVVGLMAMLVPNFADFLSLVGSSVCVLLGFVLPAAFHLKVFG 386
Query: 257 ---GTLGIAFSVALSVVGACMGIHTTGVSI 337
G G+A VA+ VVG + + T S+
Sbjct: 387 AEVGWPGLAGDVAVIVVGTALAVSGTWTSL 416
>08_02_1240 +
25504789-25504794,25505421-25505555,25505854-25505964,
25506091-25506183,25506264-25506884,25506970-25507143,
25507239-25507464,25507560-25507651,25507744-25507842,
25507936-25507984,25508071-25508124,25508312-25508484,
25508561-25508632,25508713-25508808,25509032-25509048,
25509704-25509875,25509973-25510071,25510381-25510484,
25510940-25511126,25511212-25511220
Length = 862
Score = 27.1 bits (57), Expect = 3.9
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = -3
Query: 108 YFFEQIGADLPAYPERDGLFSPNFCLD 28
YFF IG DL +P R S C D
Sbjct: 724 YFFSSIGDDLLKHPSRTDFSSVRKCFD 750
>04_01_0540 - 6993470-6993763,6993963-6994389,6995193-6995371
Length = 299
Score = 27.1 bits (57), Expect = 3.9
Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Frame = -1
Query: 230 GTIQSLSAHPFRLASSTVKK*EW*D--PPRART-GNLGSISS*DIFLSKLE 87
G ++S +A+ F L STV EW D PPR+ + G+IS+ D+ +KLE
Sbjct: 107 GRLRSNTAYGFNLFRSTVPCMEWLDKQPPRSVVLVSYGTISTFDV--AKLE 155
>03_02_0884 +
12160453-12160518,12160598-12160696,12163223-12163357,
12163841-12163891,12164070-12164693,12164779-12164952,
12165047-12165272,12165368-12165459,12165551-12165649,
12165743-12165791,12165878-12165931,12166235-12166290,
12166367-12166438,12166520-12166615,12167069-12167418,
12167508-12167679,12167777-12167875,12167959-12168090,
12168185-12168288,12168369-12168401,12168744-12168930,
12169016-12169024
Length = 992
Score = 27.1 bits (57), Expect = 3.9
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = -3
Query: 108 YFFEQIGADLPAYPERDGLFSPNFCLD 28
YFF IG DL +P R S C D
Sbjct: 799 YFFSSIGDDLLKHPSRTDFSSVRKCFD 825
>08_01_0049 - 346200-347213
Length = 337
Score = 26.6 bits (56), Expect = 5.1
Identities = 17/64 (26%), Positives = 29/64 (45%)
Frame = +2
Query: 113 KMRYFLSYLFVLLVGLTIPIFSLYYLLNGKGEQISFGWFLENTSPYMWGTLGIAFSVALS 292
K Y L+ L L+ +FS+ + + K + +SF L + P +W L F A
Sbjct: 95 KAAYLLALLLFSLLSTAAAVFSVASVYSAKHDALSFPRVL-SVVPRVWRRLAATFLAAFL 153
Query: 293 VVGA 304
++ A
Sbjct: 154 LLFA 157
>04_01_0551 - 7119130-7119464,7119601-7119985,7121010-7121690
Length = 466
Score = 26.6 bits (56), Expect = 5.1
Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Frame = -1
Query: 230 GTIQSLSAHPFRLASSTVKK*EW*D--PPRART-GNLGSISS*DIFLSKLE 87
G ++S +A+ F L STV EW D PPR+ + G++S+ D+ +KLE
Sbjct: 253 GRLRSNTAYGFNLFRSTVPCMEWLDKQPPRSVVLVSYGTVSTFDV--AKLE 301
>03_06_0522 -
34494989-34495045,34495171-34495234,34495378-34495494,
34495878-34496032,34496221-34496319,34496464-34496593,
34496727-34496866,34497050-34497239,34497346-34497547,
34497589-34497631
Length = 398
Score = 26.6 bits (56), Expect = 5.1
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Frame = +2
Query: 167 PIFSLYYLLNGK-GEQISFG--WFLENTSPYMWGTLGIAFSVALSVVG 301
P+F + +G G ISF WFL T P + +G + +SV G
Sbjct: 326 PMFWAFATASGLLGLAISFSSVWFLHRTGPTTYSLVGSLNKIPISVAG 373
>05_05_0064 + 22063951-22064462,22066344-22066566
Length = 244
Score = 26.2 bits (55), Expect = 6.7
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -2
Query: 340 DYAYTSCVNTHASSYHGQCDGESDA 266
DY T C + ASSY G+ + E DA
Sbjct: 56 DYIST-CASVRASSYDGEAEEEEDA 79
>03_01_0412 - 3177251-3177302,3177663-3177732,3177947-3178355
Length = 176
Score = 26.2 bits (55), Expect = 6.7
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -2
Query: 307 ASSYHGQCDGESDA*RPPHVRGRIFQEPSKA 215
A++ G C G+ D R PHV ++ + P A
Sbjct: 8 ATTAGGSCGGKKDLRRLPHVYSKVLELPFPA 38
>03_05_0428 + 24152409-24152783,24152885-24153139,24153204-24153917
Length = 447
Score = 25.8 bits (54), Expect = 8.9
Identities = 12/41 (29%), Positives = 18/41 (43%)
Frame = -1
Query: 296 PRTVRRRKRCLTSPTCKGTYFPGTIQSLSAHPFRLASSTVK 174
PRT RR C +P C+ Q +S P L ++ +
Sbjct: 238 PRTSSRRSSCYATPLCRTPSKVELYQKVSPTPSALTDASAR 278
>03_03_0023 + 13839421-13840326
Length = 301
Score = 25.8 bits (54), Expect = 8.9
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -1
Query: 311 PCKLLPRTVRRRKRCLTSP 255
P + LPR +RRR R L SP
Sbjct: 112 PAEDLPRVLRRRPRLLVSP 130
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,856,791
Number of Sequences: 37544
Number of extensions: 195895
Number of successful extensions: 509
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 509
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 482105440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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