Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_O11
         (341 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44424| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.3  
SB_34539| Best HMM Match : SIR2 (HMM E-Value=1.7)                      28   2.3  
SB_43344| Best HMM Match : Pkinase (HMM E-Value=6.9e-08)               27   4.0  
SB_35286| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.0  
SB_43342| Best HMM Match : F-box (HMM E-Value=4.1e-09)                 27   5.3  
SB_6134| Best HMM Match : DUF1099 (HMM E-Value=5.5)                    27   5.3  
SB_4780| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   5.3  
SB_37000| Best HMM Match : Astacin (HMM E-Value=5.5e-19)               26   7.0  
SB_39386| Best HMM Match : RVT_1 (HMM E-Value=7.1e-28)                 26   9.2  
SB_22858| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.2  
SB_32355| Best HMM Match : Laminin_EGF (HMM E-Value=0)                 26   9.2  
SB_3546| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-29)                  26   9.2  

>SB_44424| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1350

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -1

Query: 266 LTSPTCKGTYFPGTIQSLSAHPF-RLASSTVKK*EW*D 156
           L  PTC GT +P  IQ +   P+ R A S V+  EW D
Sbjct: 718 LKDPTCGGTTYPCLIQYVMFPPYTRPAGSAVE--EWVD 753


>SB_34539| Best HMM Match : SIR2 (HMM E-Value=1.7)
          Length = 1384

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -1

Query: 266 LTSPTCKGTYFPGTIQSLSAHPF-RLASSTVKK*EW*D 156
           L  PTC GT +P  IQ +   P+ R A S V+  EW D
Sbjct: 134 LKDPTCGGTTYPCLIQYVMFPPYTRPAGSAVE--EWVD 169


>SB_43344| Best HMM Match : Pkinase (HMM E-Value=6.9e-08)
          Length = 424

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
 Frame = +1

Query: 82  ISSNLLKKISQDEILPKLPVRALGGSHHSY--FFTVLLAKRKG*ADKLWMVPGKYVPLHV 255
           +  ++L+KI  +E+LP+L +      H +   F    + +     D+LW+V      LH 
Sbjct: 87  VIDSILEKI--EEVLPELEILKKFSDHPNIAGFHGAFIQRDPNRQDQLWLVMEGVEYLHR 144

Query: 256 GDVRHRFLR 282
            +V HR ++
Sbjct: 145 KNVMHRDIK 153


>SB_35286| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 564

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +2

Query: 89  PICSKKYLKMRYFLSYLFVLLVGLTIPIFSLYYLLNGKGEQ 211
           P+  ++ +     ++Y+F LLV  +IP   +  +LN  GEQ
Sbjct: 421 PLQIEQIMDQEVLMTYIFHLLVIASIPYVLVLQVLNLSGEQ 461


>SB_43342| Best HMM Match : F-box (HMM E-Value=4.1e-09)
          Length = 456

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = -1

Query: 152 PRARTGNLGSISS*DIFLSKLELIYPL 72
           PR RTG+ GS S+    LSK  L  PL
Sbjct: 430 PRRRTGSRGSFSATQFALSKYALETPL 456


>SB_6134| Best HMM Match : DUF1099 (HMM E-Value=5.5)
          Length = 743

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 24/85 (28%), Positives = 41/85 (48%)
 Frame = +1

Query: 52  KTVPFGISG*ISSNLLKKISQDEILPKLPVRALGGSHHSYFFTVLLAKRKG*ADKLWMVP 231
           K  P  ++G +  N+L +   D++  KL ++ L       F  +L  +R+   + L   P
Sbjct: 4   KEAPAVLAG-LVQNILDEDIPDDVKHKL-LKPLVPEVWREFDPLLPGRRQKGPESL--DP 59

Query: 232 GKYVPLHVGDVRHRFLRRTVRGRSL 306
            KY  L VG    RF+  T+RG+ +
Sbjct: 60  EKYYSLFVGGAHLRFVDATLRGQDI 84


>SB_4780| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 799

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 24/85 (28%), Positives = 41/85 (48%)
 Frame = +1

Query: 52  KTVPFGISG*ISSNLLKKISQDEILPKLPVRALGGSHHSYFFTVLLAKRKG*ADKLWMVP 231
           K  P  ++G +  N+L +   D++  KL ++ L       F  +L  +R+   + L   P
Sbjct: 4   KEAPAVLAG-LVQNILDEDIPDDVKHKL-LKPLVPEVWREFDPLLPGRRQKGPESL--DP 59

Query: 232 GKYVPLHVGDVRHRFLRRTVRGRSL 306
            KY  L VG    RF+  T+RG+ +
Sbjct: 60  EKYYSLFVGGAHLRFVDATLRGQDI 84


>SB_37000| Best HMM Match : Astacin (HMM E-Value=5.5e-19)
          Length = 1341

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 42  WAKKDRPFRDKRVNQLQFAQKNISR 116
           W +++RP RDK V   +FA    SR
Sbjct: 772 WHEQNRPDRDKYVKSWRFAYSRYSR 796


>SB_39386| Best HMM Match : RVT_1 (HMM E-Value=7.1e-28)
          Length = 1239

 Score = 25.8 bits (54), Expect = 9.2
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = -1

Query: 326  QLCE--YPCKLLPRTVRRRKRCLTSPTCK 246
            QLC+  + C+ LP+ VR++KR   S T K
Sbjct: 953  QLCDVSFGCETLPQPVRQKKRDTHSSTRK 981


>SB_22858| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1404

 Score = 25.8 bits (54), Expect = 9.2
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -3

Query: 90   GADLPAYPERDGLFSPNFC 34
            G +LP YPE    FSP  C
Sbjct: 1112 GEELPLYPEPTHCFSPRTC 1130


>SB_32355| Best HMM Match : Laminin_EGF (HMM E-Value=0)
          Length = 1358

 Score = 25.8 bits (54), Expect = 9.2
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +2

Query: 26  LSRQKLGEKRPSLSG*AGKSAPICSK 103
           LSRQ     RP L    G S+P+C+K
Sbjct: 880 LSRQDTHGCRPCLCDYGGSSSPVCNK 905


>SB_3546| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-29)
          Length = 447

 Score = 25.8 bits (54), Expect = 9.2
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +2

Query: 98  SKKYLKMRYFLSYLFVLLVGLTIPIFSLYYLLNGKGEQISFGWFL 232
           S +  K     +YLF+ +V +      +Y + N K  +ISF +F+
Sbjct: 22  SSRSTKTGLTCAYLFIFIVAVIGNTVVIYIVRNEKRLRISFNYFI 66


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,267,286
Number of Sequences: 59808
Number of extensions: 231848
Number of successful extensions: 643
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 498218920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)