Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_O11
         (341 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g32530.1 68417.m04631 vacuolar ATP synthase, putative / V-ATP...    44   3e-05
At2g25610.1 68415.m03068 H+-transporting two-sector ATPase, C su...    43   6e-05
At1g47670.1 68414.m05296 amino acid transporter family protein s...    38   0.002
At4g32650.2 68417.m04648 inward rectifying potassium channel, pu...    27   3.3  
At4g32650.1 68417.m04647 inward rectifying potassium channel, pu...    27   3.3  
At2g23200.1 68415.m02771 protein kinase family protein contains ...    27   3.3  
At1g79130.1 68414.m09227 auxin-responsive family protein similar...    27   4.3  
At1g15690.1 68414.m01883 pyrophosphate-energized vacuolar membra...    27   4.3  
At3g19340.1 68416.m02454 expressed protein                             26   5.7  
At5g03450.1 68418.m00300 zinc finger (C3HC4-type RING finger) fa...    26   7.6  
At4g34460.3 68417.m04900 guanine nucleotide-binding protein beta...    26   7.6  
At3g58800.1 68416.m06553 expressed protein proline-rich protein ...    26   7.6  
At1g27410.1 68414.m03341 DNA cross-link repair protein-related c...    26   7.6  

>At4g32530.1 68417.m04631 vacuolar ATP synthase, putative /
           V-ATPase, putative SP|P23968 Vacuolar ATP synthase 22
           kDa proteolipid subunit (EC 3.6.3.14) {Saccharomyces
           cerevisiae}; contains Pfam profile PF00137: ATP synthase
           subunit C
          Length = 180

 Score = 44.0 bits (99), Expect = 3e-05
 Identities = 20/46 (43%), Positives = 29/46 (63%)
 Frame = +2

Query: 203 GEQISFGWFLENTSPYMWGTLGIAFSVALSVVGACMGIHTTGVSIV 340
           G   S+G  L   SPY +  +GIA S+ +SV+GA  GI+ TG S++
Sbjct: 8   GHASSWGAALVRISPYTFSAIGIAISIGVSVLGAAWGIYITGSSLI 53


>At2g25610.1 68415.m03068 H+-transporting two-sector ATPase, C
           subunit family protein similar to SP|P23968 Vacuolar ATP
           synthase 22 kDa proteolipid subunit (EC 3.6.3.14)
           {Saccharomyces cerevisiae}; contains Pfam profile
           PF00137: ATP synthase subunit C
          Length = 178

 Score = 42.7 bits (96), Expect = 6e-05
 Identities = 19/42 (45%), Positives = 28/42 (66%)
 Frame = +2

Query: 215 SFGWFLENTSPYMWGTLGIAFSVALSVVGACMGIHTTGVSIV 340
           S+G  L   SPY +  +GIA S+ +SV+GA  GI+ TG S++
Sbjct: 10  SWGAALVRISPYTFSAIGIAISIGVSVLGAAWGIYITGSSLI 51


>At1g47670.1 68414.m05296 amino acid transporter family protein
           similar to lysine and histidine specific transporter
           GI:2576361 from [Arabidopsis thaliana]; contains Pfam
           profile PF01490: Transmembrane amino acid transporter
           protein
          Length = 519

 Score = 37.9 bits (84), Expect = 0.002
 Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
 Frame = +2

Query: 125 FLSYLFVLLVGLTIPIFSLY----YLLNGKGEQISFGWFLENTSPYMWGTLGIAFSVALS 292
           FLS L  LL GLT+P+   Y    ++L  K  + SF W+      +  G LG+AFS+A S
Sbjct: 443 FLSSLAGLLGGLTLPVTFAYPCFMWVLIKKPAKYSFNWYFH----WGLGWLGVAFSLAFS 498

Query: 293 VVGACMGIHTTGVSI 337
            +G    + T G+ +
Sbjct: 499 -IGGIWSMVTNGLKL 512


>At4g32650.2 68417.m04648 inward rectifying potassium channel,
           putative (KAT3) (AKT4) (KC1) identical to K+ inward
           rectifying channel protein KC1 [Arabidopsis thaliana]
           gi|4090537|gb|AAC98810; similar to (KAT1) K+ channel
           [Arabidopsis thaliana] gi|1165000|emb|CAA63601;
           Shaker-type channel (1P/6TM), PMID:11500563
          Length = 597

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +2

Query: 92  ICSKKYLKMRYFLSYLFVLLVGLTIPIFSLYYLLNGK-GEQISFGW 226
           +   K +  RY  S  FV+ V  T+PI  +Y  + G  G   +FG+
Sbjct: 150 VTDHKLIAKRYLKSVAFVMDVASTLPIQFIYKTITGDVGRGQAFGF 195


>At4g32650.1 68417.m04647 inward rectifying potassium channel,
           putative (KAT3) (AKT4) (KC1) identical to K+ inward
           rectifying channel protein KC1 [Arabidopsis thaliana]
           gi|4090537|gb|AAC98810; similar to (KAT1) K+ channel
           [Arabidopsis thaliana] gi|1165000|emb|CAA63601;
           Shaker-type channel (1P/6TM), PMID:11500563
          Length = 662

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +2

Query: 92  ICSKKYLKMRYFLSYLFVLLVGLTIPIFSLYYLLNGK-GEQISFGW 226
           +   K +  RY  S  FV+ V  T+PI  +Y  + G  G   +FG+
Sbjct: 150 VTDHKLIAKRYLKSVAFVMDVASTLPIQFIYKTITGDVGRGQAFGF 195


>At2g23200.1 68415.m02771 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 834

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 4/74 (5%)
 Frame = +2

Query: 14  F*VFLSRQKLGEKRPSLSG*AGKSAPI----CSKKYLKMRYFLSYLFVLLVGLTIPIFSL 181
           F VFL R++  + +P + G      P+     S      +Y  S L  L +GLTIP   +
Sbjct: 422 FMVFLKRRRSKKTKPEVEGTVWSPLPLHRGGSSDNRPISQYHNSPLRNLHLGLTIPFTDI 481

Query: 182 YYLLNGKGEQISFG 223
               N   EQ+  G
Sbjct: 482 LSATNNFDEQLLIG 495


>At1g79130.1 68414.m09227 auxin-responsive family protein similar to
           auxin-induced protein X10A (SP:P33080) [Glycine max]
          Length = 134

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
 Frame = +1

Query: 151 GGSHH---SYFFTVLLAKRKG*ADKLWMVPGKYVPLHVGDVRHRFL 279
           G  HH   +Y  +V L KR   A     VP  +VP++VG+ + RF+
Sbjct: 23  GDIHHPTSTYSSSVFLVKRATVASS---VPSGHVPVNVGEDKERFV 65


>At1g15690.1 68414.m01883 pyrophosphate-energized vacuolar membrane
           proton pump / pyrophosphate-energized inorganic
           pyrophosphatase (AVP-3) identical to
           pyrophosphate-energized vacuolar membrane proton pump
           (pyrophosphate-energized inorganic pyrophosphatase)
           SP:P31414 from [Arabidopsis thaliana]
          Length = 770

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 21/78 (26%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
 Frame = +2

Query: 77  GKSAPICSKKYLKMRYFLSYLFVLLVGLTIPIFSLYYLLNGKG--EQISFGWFLENTSPY 250
           GK+  +  +    M + L+   +L++ +TI +F +YY  + +G  E I+ G+ L  +S  
Sbjct: 184 GKAFIVAFRSGAVMGFLLAASGLLVLYITINVFKIYYGDDWEGLFEAIT-GYGLGGSSMA 242

Query: 251 MWGTLGIAFSVALSVVGA 304
           ++G +G       + VGA
Sbjct: 243 LFGRVGGGIYTKAADVGA 260


>At3g19340.1 68416.m02454 expressed protein
          Length = 487

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = -3

Query: 156 PTKSTNR*LRKYLILRYFFEQIGADLPAYPERDGLFSPNFCLDKKT 19
           P K     L K L+ RYF E    ++P + ++  +F     LDK T
Sbjct: 131 PIKVDESKLDKKLLKRYFEEHPHENIPDFSDKYVIFRRGIGLDKTT 176


>At5g03450.1 68418.m00300 zinc finger (C3HC4-type RING finger)
           family protein 
          Length = 630

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = -1

Query: 341 RLCLHQLCEYPCKLLPRTVRRRKRCLTSPTCKGTYFPGTI 222
           ++ LH  CE    LLPRT R  K    SP   G    G++
Sbjct: 316 QMSLHSPCEIDDILLPRTTRAIKDLHLSPHNNGLAVFGSL 355


>At4g34460.3 68417.m04900 guanine nucleotide-binding protein beta
           subunit (GB1) / GTP-binding protein beta subunit (AGB1)
           / transducin contains 7 WD-40 repeats (PF00400);
           identical to Guanine nucleotide-binding protein beta
           subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
           al, PNAS 91:9954 (1994)
          Length = 347

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = +2

Query: 167 PIFSLYYLLNGKGEQISFGWFLENTSPYMWGTLGIAFSVALSVVGACMGIHT 322
           P+ S+ + ++G+   + F  +  N + Y+W TL   FS  L  +     IHT
Sbjct: 296 PVTSIAFSVSGR---LLFAGYASNNTCYVWDTLLGEFSCRLYWIWDYSRIHT 344


>At3g58800.1 68416.m06553 expressed protein proline-rich protein
           A41R, Chlorella virus PBCV-1, PIR:T17531
          Length = 344

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +1

Query: 64  FGISG*ISSNLLKKISQDEILPKLPVRALGGSHHSYFFTVL 186
           FG    I  +++K   +   L +LP+ ALG S   YF + L
Sbjct: 141 FGKEKTIVGSIIKSWVEKHKLERLPLVALGASSGGYFVSAL 181


>At1g27410.1 68414.m03341 DNA cross-link repair protein-related
           contains weak similarity to Swiss-Prot:P30620 DNA
           cross-LINK repair protein PSO2/SNM1 [Saccharomyces
           cerevisiae]
          Length = 422

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +3

Query: 219 LDGSWKIRPLTCGGR*ASLSPSHCPW*ELA 308
           L G W   PL C    ASL PS  P  +L+
Sbjct: 31  LSGGWSQGPLYCSRTTASLFPSRFPGFDLS 60


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,924,209
Number of Sequences: 28952
Number of extensions: 157269
Number of successful extensions: 420
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 419
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 409426656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)