Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_O10
         (579 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr...    28   0.86 
SPAC23D3.03c |||GTPase activating protein |Schizosaccharomyces p...    26   4.6  
SPAC2G11.10c |||URM1 activating enzyme |Schizosaccharomyces pomb...    26   4.6  
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    25   6.1  
SPBC18H10.20c |||conserved fungal protein|Schizosaccharomyces po...    25   8.0  
SPCC4G3.10c |rhp42|rhp4b|DNA repair protein Rhp42|Schizosaccharo...    25   8.0  
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch...    25   8.0  

>SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1250

 Score = 28.3 bits (60), Expect = 0.86
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +1

Query: 151 LYYNIVIGRYVSAARITMELKNEGRGEVIRLVVNKLLAESKRN 279
           + +N  I +Y+  + + +E K E   EV    + KLL+ S +N
Sbjct: 185 IQFNSTIPKYIQYSHVDLETKEETLVEVSGRSLRKLLSSSSKN 227


>SPAC23D3.03c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 472

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +1

Query: 490 MSWKIIPHWWNQRAYFEIVNKQFGQYLKL 576
           MS  +  HWW+++ Y    + + G  LK+
Sbjct: 18  MSKSVRKHWWSRKGYHPTGSSKNGSRLKI 46


>SPAC2G11.10c |||URM1 activating enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 401

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -1

Query: 483 TLPFV-FVTVRTSIAISVCTPFEFKSICISEIDKL 382
           T P + F+ VR  +   +C    FK+I +SE+D L
Sbjct: 313 TSPHITFLDVREPVQFGICRLPLFKNIPLSEVDSL 347


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
            Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +1

Query: 157  YNIVIGRYVSAARITMELKNEGRGEVIRLVVNKLL 261
            Y I+I R ++  +I   +KN+  G+V  L+ + +L
Sbjct: 1556 YYIIIKRPIALGKIKRNIKNDRYGDVGELIADFML 1590


>SPBC18H10.20c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 361

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +1

Query: 454 AYGDKNEWESDRMSWKIIPH 513
           A  D N+W+ +R++W++  H
Sbjct: 208 AQNDGNDWKINRVTWRLEEH 227


>SPCC4G3.10c |rhp42|rhp4b|DNA repair protein
           Rhp42|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 686

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 10/45 (22%), Positives = 23/45 (51%)
 Frame = +1

Query: 367 LGEQVKFINLRDANALKLEWGTDRDGDRGAYGDKNEWESDRMSWK 501
           L + +  +N    +A   E G+D D ++    + +E++ D  +W+
Sbjct: 63  LDDNISALNSLQRSASSSEKGSDEDNEKLGSSEDDEFDDDFDTWE 107


>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 216

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = +1

Query: 481 SDRMSWKIIPHWW 519
           + R+++K +PHWW
Sbjct: 92  TSRITYKNVPHWW 104


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,287,689
Number of Sequences: 5004
Number of extensions: 43759
Number of successful extensions: 136
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)